Results 101 - 120 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29422 | 3' | -56.2 | NC_006151.1 | + | 56567 | 0.66 | 0.89372 |
Target: 5'- -cGGG-CGACGCGcCGCCGCccgaCGGGCu -3' miRNA: 3'- gcUCCaGUUGUGC-GUGGCGa---GCCUGu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 106503 | 0.66 | 0.89372 |
Target: 5'- aGcGGcUGGCGCGCGCCGUgcCGGGCGc -3' miRNA: 3'- gCuCCaGUUGUGCGUGGCGa-GCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 54633 | 0.66 | 0.89372 |
Target: 5'- cCGGGGggaagcggCGGCGCgaGCGCUGCgUGGACGa -3' miRNA: 3'- -GCUCCa-------GUUGUG--CGUGGCGaGCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 68076 | 0.66 | 0.900209 |
Target: 5'- -cAGGUCGGCGgGCAgCGcCUCGaGGCu -3' miRNA: 3'- gcUCCAGUUGUgCGUgGC-GAGC-CUGu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 3448 | 0.66 | 0.900209 |
Target: 5'- cCGccGUCGGgCGCGgGgUGCUCGGGCAu -3' miRNA: 3'- -GCucCAGUU-GUGCgUgGCGAGCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 84085 | 0.66 | 0.900209 |
Target: 5'- uCGAGcUCAAgACGUGCCGCUuccccCGGAa- -3' miRNA: 3'- -GCUCcAGUUgUGCGUGGCGA-----GCCUgu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 17087 | 0.66 | 0.900209 |
Target: 5'- -cGGGUCAgGCGCGCGCCcgUCGGGg- -3' miRNA: 3'- gcUCCAGU-UGUGCGUGGcgAGCCUgu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 3352 | 0.66 | 0.900209 |
Target: 5'- aCGAGG---GCGCGgGCCacCUCGGGCGg -3' miRNA: 3'- -GCUCCaguUGUGCgUGGc-GAGCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 122373 | 0.66 | 0.906469 |
Target: 5'- aCGGGcUCGACgagGCGCGCCGC--GGGCGc -3' miRNA: 3'- -GCUCcAGUUG---UGCGUGGCGagCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 71072 | 0.66 | 0.906469 |
Target: 5'- cCGuGGUCuucuaccacCACgGCGCCGCgggcgCGGGCGc -3' miRNA: 3'- -GCuCCAGuu-------GUG-CGUGGCGa----GCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 33935 | 0.66 | 0.906469 |
Target: 5'- uCGAGGcCcGCGCGCcCCggggGCUCGGGg- -3' miRNA: 3'- -GCUCCaGuUGUGCGuGG----CGAGCCUgu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 123002 | 0.66 | 0.906469 |
Target: 5'- aCGGGccCGGCGCGCccCCGCcggCGGACGc -3' miRNA: 3'- -GCUCcaGUUGUGCGu-GGCGa--GCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 57232 | 0.66 | 0.906469 |
Target: 5'- uCGcAGG-CGGCGCGCGCgGcCUCGG-CGu -3' miRNA: 3'- -GC-UCCaGUUGUGCGUGgC-GAGCCuGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 5620 | 0.66 | 0.906469 |
Target: 5'- gGAGGgggCGcCGC-CGCCGC-CGGGCGc -3' miRNA: 3'- gCUCCa--GUuGUGcGUGGCGaGCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 89661 | 0.66 | 0.906469 |
Target: 5'- aGAGGU-GGCGCGU---GCUCGGGCGc -3' miRNA: 3'- gCUCCAgUUGUGCGuggCGAGCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 73383 | 0.66 | 0.906469 |
Target: 5'- aCGGGGgcgcgCAGCGCGgcCGCCGCguacgCGGcCGu -3' miRNA: 3'- -GCUCCa----GUUGUGC--GUGGCGa----GCCuGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 21588 | 0.66 | 0.906469 |
Target: 5'- gCGGGGUCgAugGCGUACgGCguggCGG-CGg -3' miRNA: 3'- -GCUCCAG-UugUGCGUGgCGa---GCCuGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 128420 | 0.66 | 0.906469 |
Target: 5'- uGAGG-CcGCACaCGCCGCUCuuccaGGGCGu -3' miRNA: 3'- gCUCCaGuUGUGcGUGGCGAG-----CCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 53627 | 0.66 | 0.910113 |
Target: 5'- -cAGGUCGcgcuucugcagcuCGCGCACCGUcggCGGGCu -3' miRNA: 3'- gcUCCAGUu------------GUGCGUGGCGa--GCCUGu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 122921 | 0.66 | 0.910712 |
Target: 5'- uCGAGGgcggcgaCGACGCggacgccgacggcgGCGCCGCggggggcgCGGACGc -3' miRNA: 3'- -GCUCCa------GUUGUG--------------CGUGGCGa-------GCCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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