miRNA display CGI


Results 61 - 80 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 3' -56.2 NC_006151.1 + 39750 0.68 0.80844
Target:  5'- uCGGGGacccggacuUUGACGCggGCGCCGCcuUCGGGCAc -3'
miRNA:   3'- -GCUCC---------AGUUGUG--CGUGGCG--AGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 46741 0.68 0.80844
Target:  5'- cCGGGGUCGgcgaACAC-CGCCGCUUcGGCu -3'
miRNA:   3'- -GCUCCAGU----UGUGcGUGGCGAGcCUGu -5'
29422 3' -56.2 NC_006151.1 + 70653 0.68 0.80844
Target:  5'- gCGAGG-CGcccguccucACGCGCGCCGC-CGG-CGa -3'
miRNA:   3'- -GCUCCaGU---------UGUGCGUGGCGaGCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 67870 0.68 0.80844
Target:  5'- cCGAGGUgGcGCGCGCGCCaGCccgCgGGGCAc -3'
miRNA:   3'- -GCUCCAgU-UGUGCGUGG-CGa--G-CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 85885 0.68 0.807562
Target:  5'- aCGAGGUCAucgcggcGCACGaCGCCGUggcCGuGCAg -3'
miRNA:   3'- -GCUCCAGU-------UGUGC-GUGGCGa--GCcUGU- -5'
29422 3' -56.2 NC_006151.1 + 20889 0.68 0.807562
Target:  5'- uGGGGUCGAggcgcagcagcucCACGCGCCcgcuguaguuGCUCGG-CGa -3'
miRNA:   3'- gCUCCAGUU-------------GUGCGUGG----------CGAGCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 60076 0.68 0.799587
Target:  5'- aGAGGcgCAuccCGCGCGCCGCcgcgaacgcCGGGCGg -3'
miRNA:   3'- gCUCCa-GUu--GUGCGUGGCGa--------GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 1845 0.68 0.799587
Target:  5'- cCGAGGggacCGAgGC-CGCCGCcgCGGACGc -3'
miRNA:   3'- -GCUCCa---GUUgUGcGUGGCGa-GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 4104 0.68 0.799587
Target:  5'- aCGAGGgCGACAgaguccgcggccUGcCGCCGCUCGGcCGg -3'
miRNA:   3'- -GCUCCaGUUGU------------GC-GUGGCGAGCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 126415 0.68 0.799587
Target:  5'- uCGGGG-CGAuggcCACGCGCCGC-CGG-CAc -3'
miRNA:   3'- -GCUCCaGUU----GUGCGUGGCGaGCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 59731 0.68 0.794203
Target:  5'- aCGGGGUUggcgAGCGCGCGCagcaGCuccugcagcucguccUCGGGCAc -3'
miRNA:   3'- -GCUCCAG----UUGUGCGUGg---CG---------------AGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 97316 0.68 0.790584
Target:  5'- -cGGG-CAGCGCGCGCUGCgCGGGu- -3'
miRNA:   3'- gcUCCaGUUGUGCGUGGCGaGCCUgu -5'
29422 3' -56.2 NC_006151.1 + 112600 0.68 0.790584
Target:  5'- gGAGGcCGcCGCgGCGCCGCUggcgcUGGACGa -3'
miRNA:   3'- gCUCCaGUuGUG-CGUGGCGA-----GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 19769 0.68 0.790584
Target:  5'- uCGAGGUCAu--CGuCGCCGgcCUCGGugGa -3'
miRNA:   3'- -GCUCCAGUuguGC-GUGGC--GAGCCugU- -5'
29422 3' -56.2 NC_006151.1 + 89983 0.69 0.772162
Target:  5'- aCGuAGGU--GCACGUGCCGCgcaggcugCGGGCGa -3'
miRNA:   3'- -GC-UCCAguUGUGCGUGGCGa-------GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 66545 0.69 0.772162
Target:  5'- uCGGGGgcgcgcgCGGC-CGCGCCGCcgUGGACc -3'
miRNA:   3'- -GCUCCa------GUUGuGCGUGGCGa-GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 101951 0.69 0.772162
Target:  5'- gGAGGaccugagCAGCACGCACaCGgUCGG-CGg -3'
miRNA:   3'- gCUCCa------GUUGUGCGUG-GCgAGCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 88604 0.69 0.772162
Target:  5'- aGAGGacgggCGGCGCGCucagGCCGaaCUCGGGCu -3'
miRNA:   3'- gCUCCa----GUUGUGCG----UGGC--GAGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 38084 0.69 0.772162
Target:  5'- gGAGGUgaCGGC-CGCGCUGCUCGcGCu -3'
miRNA:   3'- gCUCCA--GUUGuGCGUGGCGAGCcUGu -5'
29422 3' -56.2 NC_006151.1 + 82656 0.69 0.762761
Target:  5'- gCGAGGgCGGCccacccugcgGCGCGCCGCgggcgaGGGCGg -3'
miRNA:   3'- -GCUCCaGUUG----------UGCGUGGCGag----CCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.