miRNA display CGI


Results 61 - 80 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 3' -56.2 NC_006151.1 + 73383 0.66 0.906469
Target:  5'- aCGGGGgcgcgCAGCGCGgcCGCCGCguacgCGGcCGu -3'
miRNA:   3'- -GCUCCa----GUUGUGC--GUGGCGa----GCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 73599 0.75 0.429149
Target:  5'- cCGGGGUgCAGCugGCGCCGCagcUGGugGg -3'
miRNA:   3'- -GCUCCA-GUUGugCGUGGCGa--GCCugU- -5'
29422 3' -56.2 NC_006151.1 + 75607 0.81 0.201169
Target:  5'- aCGAGGUCGGCGCGCACgCGCgccgagcccaCGGGCu -3'
miRNA:   3'- -GCUCCAGUUGUGCGUG-GCGa---------GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 81429 0.68 0.817134
Target:  5'- cCGAGGUCGcgGCgcagcgagacgGCGCACgGCgagaGGACGu -3'
miRNA:   3'- -GCUCCAGU--UG-----------UGCGUGgCGag--CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 81908 0.71 0.653749
Target:  5'- --cGGUCGcgGCGCGCCGCcUCGGAgAa -3'
miRNA:   3'- gcuCCAGUugUGCGUGGCG-AGCCUgU- -5'
29422 3' -56.2 NC_006151.1 + 82179 0.71 0.633368
Target:  5'- cCGGGGgcgCGAUcauGCGCAuCCGCUCGG-CGg -3'
miRNA:   3'- -GCUCCa--GUUG---UGCGU-GGCGAGCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 82298 0.7 0.724095
Target:  5'- gCGGGG-CAGCGCGCcuCCGCguccgcgaGGACGg -3'
miRNA:   3'- -GCUCCaGUUGUGCGu-GGCGag------CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 82656 0.69 0.762761
Target:  5'- gCGAGGgCGGCccacccugcgGCGCGCCGCgggcgaGGGCGg -3'
miRNA:   3'- -GCUCCaGUUG----------UGCGUGGCGag----CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 82927 0.67 0.872904
Target:  5'- -aAGG-CGcACACGCACUGC-CGGAUg -3'
miRNA:   3'- gcUCCaGU-UGUGCGUGGCGaGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 84085 0.66 0.900209
Target:  5'- uCGAGcUCAAgACGUGCCGCUuccccCGGAa- -3'
miRNA:   3'- -GCUCcAGUUgUGCGUGGCGA-----GCCUgu -5'
29422 3' -56.2 NC_006151.1 + 84573 0.68 0.825661
Target:  5'- gCGAGGgccUCGACGCGCGCCucgcGCUgGcGCAc -3'
miRNA:   3'- -GCUCC---AGUUGUGCGUGG----CGAgCcUGU- -5'
29422 3' -56.2 NC_006151.1 + 84747 0.78 0.309209
Target:  5'- uCGAGGagaCGGCGCGCGCCGCcgaggaggCGGACGc -3'
miRNA:   3'- -GCUCCa--GUUGUGCGUGGCGa-------GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 85430 0.76 0.377947
Target:  5'- aCGAGGUCAAC-CGCGCCGCggccgccuuccUGGGCc -3'
miRNA:   3'- -GCUCCAGUUGuGCGUGGCGa----------GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 85706 0.67 0.86553
Target:  5'- aCGucGUCGugGCcUACCGCgCGGACGa -3'
miRNA:   3'- -GCucCAGUugUGcGUGGCGaGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 85885 0.68 0.807562
Target:  5'- aCGAGGUCAucgcggcGCACGaCGCCGUggcCGuGCAg -3'
miRNA:   3'- -GCUCCAGU-------UGUGC-GUGGCGa--GCcUGU- -5'
29422 3' -56.2 NC_006151.1 + 86654 0.7 0.694238
Target:  5'- gGAGGcgcUCAcGCGCGCGCUGCUCucGACGg -3'
miRNA:   3'- gCUCC---AGU-UGUGCGUGGCGAGc-CUGU- -5'
29422 3' -56.2 NC_006151.1 + 86722 0.68 0.829023
Target:  5'- --uGGUCGcgGCGCGcCGCCGCgaggccggcgugcgCGGACAc -3'
miRNA:   3'- gcuCCAGU--UGUGC-GUGGCGa-------------GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 88604 0.69 0.772162
Target:  5'- aGAGGacgggCGGCGCGCucagGCCGaaCUCGGGCu -3'
miRNA:   3'- gCUCCa----GUUGUGCG----UGGC--GAGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 88902 0.66 0.882866
Target:  5'- uCGGGGUCGGCgucgggcgagcggaaGCGC-CCGCggcgguagaagCGGACc -3'
miRNA:   3'- -GCUCCAGUUG---------------UGCGuGGCGa----------GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 89143 0.7 0.684171
Target:  5'- gGGGcGUCGAgacCGCGC-CCGcCUCGGGCGa -3'
miRNA:   3'- gCUC-CAGUU---GUGCGuGGC-GAGCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.