miRNA display CGI


Results 81 - 100 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 3' -56.2 NC_006151.1 + 89661 0.66 0.906469
Target:  5'- aGAGGU-GGCGCGU---GCUCGGGCGc -3'
miRNA:   3'- gCUCCAgUUGUGCGuggCGAGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 89864 0.78 0.29529
Target:  5'- gGAcGGUCGccucguAgACGCGCCGCUCGGGCu -3'
miRNA:   3'- gCU-CCAGU------UgUGCGUGGCGAGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 89983 0.69 0.772162
Target:  5'- aCGuAGGU--GCACGUGCCGCgcaggcugCGGGCGa -3'
miRNA:   3'- -GC-UCCAguUGUGCGUGGCGa-------GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 95291 0.66 0.880063
Target:  5'- aCGGcGG-CGACGCGCGCgGCcCGGcGCAg -3'
miRNA:   3'- -GCU-CCaGUUGUGCGUGgCGaGCC-UGU- -5'
29422 3' -56.2 NC_006151.1 + 95994 0.71 0.66087
Target:  5'- gGGGGcCAccucguccgugaugGCGCGCACCGCcuccUCGGugGu -3'
miRNA:   3'- gCUCCaGU--------------UGUGCGUGGCG----AGCCugU- -5'
29422 3' -56.2 NC_006151.1 + 96853 0.66 0.912495
Target:  5'- gCGGGGaaAcCGCGC-CCGC-CGGGCGc -3'
miRNA:   3'- -GCUCCagUuGUGCGuGGCGaGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 97316 0.68 0.790584
Target:  5'- -cGGG-CAGCGCGCGCUGCgCGGGu- -3'
miRNA:   3'- gcUCCaGUUGUGCGUGGCGaGCCUgu -5'
29422 3' -56.2 NC_006151.1 + 98208 0.69 0.732925
Target:  5'- gCGGGGUCGAgUGCGCGgcggcgcCCGCgcgCGGACc -3'
miRNA:   3'- -GCUCCAGUU-GUGCGU-------GGCGa--GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 98946 0.7 0.684171
Target:  5'- cCGAGG-CGGCGCGgGCCGU--GGACGa -3'
miRNA:   3'- -GCUCCaGUUGUGCgUGGCGagCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 98991 0.73 0.522742
Target:  5'- gCGAGGUCAACGCcaCGCCGCgcaCGGcCGu -3'
miRNA:   3'- -GCUCCAGUUGUGc-GUGGCGa--GCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 99585 0.68 0.80844
Target:  5'- gCGAGGUggCGGCGgccgaGCGCCGCgcCGGGCu -3'
miRNA:   3'- -GCUCCA--GUUGUg----CGUGGCGa-GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 100058 0.7 0.724095
Target:  5'- aCGGGGUCGuGCGCGCGgCCGCcgaggugcUCGaGGCGc -3'
miRNA:   3'- -GCUCCAGU-UGUGCGU-GGCG--------AGC-CUGU- -5'
29422 3' -56.2 NC_006151.1 + 100388 1.09 0.002971
Target:  5'- cCGAGGUCAACACGCACCGCUCGGACAu -3'
miRNA:   3'- -GCUCCAGUUGUGCGUGGCGAGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 101951 0.69 0.772162
Target:  5'- gGAGGaccugagCAGCACGCACaCGgUCGG-CGg -3'
miRNA:   3'- gCUCCa------GUUGUGCGUG-GCgAGCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 102335 0.71 0.663918
Target:  5'- gGAGG-C-GCGCGCGCUGCU-GGACGu -3'
miRNA:   3'- gCUCCaGuUGUGCGUGGCGAgCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 103575 0.66 0.880063
Target:  5'- --uGGUCAACGCGC-UCGC--GGACAa -3'
miRNA:   3'- gcuCCAGUUGUGCGuGGCGagCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 103908 0.66 0.912495
Target:  5'- gGAGGUgGcGCGCGCgGCCGCcgUGGAgGa -3'
miRNA:   3'- gCUCCAgU-UGUGCG-UGGCGa-GCCUgU- -5'
29422 3' -56.2 NC_006151.1 + 104028 0.69 0.743621
Target:  5'- gGAGGUgGAgCGCGCGCagcgccaGCUCuGGGCGc -3'
miRNA:   3'- gCUCCAgUU-GUGCGUGg------CGAG-CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 104546 0.7 0.718172
Target:  5'- aCGAGGcCGagcuggccgcccuggGCGCGCGgCGCgCGGACGu -3'
miRNA:   3'- -GCUCCaGU---------------UGUGCGUgGCGaGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 104896 0.66 0.877938
Target:  5'- gCGAGGUgguggacgcggcggCGGCGCGCgACCGCgacgGGGCc -3'
miRNA:   3'- -GCUCCA--------------GUUGUGCG-UGGCGag--CCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.