miRNA display CGI


Results 101 - 120 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 3' -56.2 NC_006151.1 + 105334 0.69 0.753244
Target:  5'- cCGAGGcCcGCGCGCGCgCGCUgCaGACGg -3'
miRNA:   3'- -GCUCCaGuUGUGCGUG-GCGA-GcCUGU- -5'
29422 3' -56.2 NC_006151.1 + 106503 0.66 0.89372
Target:  5'- aGcGGcUGGCGCGCGCCGUgcCGGGCGc -3'
miRNA:   3'- gCuCCaGUUGUGCGUGGCGa-GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 112600 0.68 0.790584
Target:  5'- gGAGGcCGcCGCgGCGCCGCUggcgcUGGACGa -3'
miRNA:   3'- gCUCCaGUuGUG-CGUGGCGA-----GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 113063 0.66 0.912495
Target:  5'- gCGAGGaCGACGCGUACgaGCgcgCGGcCGu -3'
miRNA:   3'- -GCUCCaGUUGUGCGUGg-CGa--GCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 113216 0.69 0.762761
Target:  5'- cCGAGG--AGCGCcgGCACCGCgccgUGGACGa -3'
miRNA:   3'- -GCUCCagUUGUG--CGUGGCGa---GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 118096 0.7 0.721137
Target:  5'- uCGAGG-CGcugcgccgcgaccuGCugGCGCUGCUCGuGGCGc -3'
miRNA:   3'- -GCUCCaGU--------------UGugCGUGGCGAGC-CUGU- -5'
29422 3' -56.2 NC_006151.1 + 118363 0.74 0.465468
Target:  5'- gCGAGG-CGGCGCGCGCCcGCUuCGGGu- -3'
miRNA:   3'- -GCUCCaGUUGUGCGUGG-CGA-GCCUgu -5'
29422 3' -56.2 NC_006151.1 + 118439 0.67 0.872904
Target:  5'- gGAGGUguGCGCGCggcucgGCCugGCcgCGGACGc -3'
miRNA:   3'- gCUCCAguUGUGCG------UGG--CGa-GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 118579 0.67 0.842184
Target:  5'- aCGAGGcgUGGCGCGUGCCGCUCu---- -3'
miRNA:   3'- -GCUCCa-GUUGUGCGUGGCGAGccugu -5'
29422 3' -56.2 NC_006151.1 + 120817 0.67 0.857949
Target:  5'- gCGAGGUgCuGgACGCGCCGCgCGacGACAc -3'
miRNA:   3'- -GCUCCA-GuUgUGCGUGGCGaGC--CUGU- -5'
29422 3' -56.2 NC_006151.1 + 122265 0.7 0.714209
Target:  5'- gCGAGGcCAcgcACAgGCGCCuGCUCGGcuGCGu -3'
miRNA:   3'- -GCUCCaGU---UGUgCGUGG-CGAGCC--UGU- -5'
29422 3' -56.2 NC_006151.1 + 122373 0.66 0.906469
Target:  5'- aCGGGcUCGACgagGCGCGCCGC--GGGCGc -3'
miRNA:   3'- -GCUCcAGUUG---UGCGUGGCGagCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 122679 0.67 0.831527
Target:  5'- cCGAGGU--GCGCGCggcgGCCGUggagcucgcgcucuUCGGGCGg -3'
miRNA:   3'- -GCUCCAguUGUGCG----UGGCG--------------AGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 122921 0.66 0.910712
Target:  5'- uCGAGGgcggcgaCGACGCggacgccgacggcgGCGCCGCggggggcgCGGACGc -3'
miRNA:   3'- -GCUCCa------GUUGUG--------------CGUGGCGa-------GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 123002 0.66 0.906469
Target:  5'- aCGGGccCGGCGCGCccCCGCcggCGGACGc -3'
miRNA:   3'- -GCUCcaGUUGUGCGu-GGCGa--GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 123257 0.67 0.872904
Target:  5'- gCGAGGcCGccgcgcgcGCGgGCACCGUcgUGGACGa -3'
miRNA:   3'- -GCUCCaGU--------UGUgCGUGGCGa-GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 123680 0.72 0.592653
Target:  5'- uCGAGGUCcuccGCGCGgAUCGCUucgcCGGACGc -3'
miRNA:   3'- -GCUCCAGu---UGUGCgUGGCGA----GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 125866 0.73 0.512993
Target:  5'- uCGAGGUguACACGCGCgaggaGCUCGccGACAc -3'
miRNA:   3'- -GCUCCAguUGUGCGUGg----CGAGC--CUGU- -5'
29422 3' -56.2 NC_006151.1 + 126415 0.68 0.799587
Target:  5'- uCGGGG-CGAuggcCACGCGCCGC-CGG-CAc -3'
miRNA:   3'- -GCUCCaGUU----GUGCGUGGCGaGCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 127228 0.67 0.872904
Target:  5'- gCGGGGcCGucACACGCGCCaGCUCuugcGGCGc -3'
miRNA:   3'- -GCUCCaGU--UGUGCGUGG-CGAGc---CUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.