Results 41 - 60 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29422 | 3' | -56.2 | NC_006151.1 | + | 97316 | 0.68 | 0.790584 |
Target: 5'- -cGGG-CAGCGCGCGCUGCgCGGGu- -3' miRNA: 3'- gcUCCaGUUGUGCGUGGCGaGCCUgu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 96853 | 0.66 | 0.912495 |
Target: 5'- gCGGGGaaAcCGCGC-CCGC-CGGGCGc -3' miRNA: 3'- -GCUCCagUuGUGCGuGGCGaGCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 95994 | 0.71 | 0.66087 |
Target: 5'- gGGGGcCAccucguccgugaugGCGCGCACCGCcuccUCGGugGu -3' miRNA: 3'- gCUCCaGU--------------UGUGCGUGGCG----AGCCugU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 95291 | 0.66 | 0.880063 |
Target: 5'- aCGGcGG-CGACGCGCGCgGCcCGGcGCAg -3' miRNA: 3'- -GCU-CCaGUUGUGCGUGgCGaGCC-UGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 89983 | 0.69 | 0.772162 |
Target: 5'- aCGuAGGU--GCACGUGCCGCgcaggcugCGGGCGa -3' miRNA: 3'- -GC-UCCAguUGUGCGUGGCGa-------GCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 89864 | 0.78 | 0.29529 |
Target: 5'- gGAcGGUCGccucguAgACGCGCCGCUCGGGCu -3' miRNA: 3'- gCU-CCAGU------UgUGCGUGGCGAGCCUGu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 89661 | 0.66 | 0.906469 |
Target: 5'- aGAGGU-GGCGCGU---GCUCGGGCGc -3' miRNA: 3'- gCUCCAgUUGUGCGuggCGAGCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 89143 | 0.7 | 0.684171 |
Target: 5'- gGGGcGUCGAgacCGCGC-CCGcCUCGGGCGa -3' miRNA: 3'- gCUC-CAGUU---GUGCGuGGC-GAGCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 88902 | 0.66 | 0.882866 |
Target: 5'- uCGGGGUCGGCgucgggcgagcggaaGCGC-CCGCggcgguagaagCGGACc -3' miRNA: 3'- -GCUCCAGUUG---------------UGCGuGGCGa----------GCCUGu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 88604 | 0.69 | 0.772162 |
Target: 5'- aGAGGacgggCGGCGCGCucagGCCGaaCUCGGGCu -3' miRNA: 3'- gCUCCa----GUUGUGCG----UGGC--GAGCCUGu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 86722 | 0.68 | 0.829023 |
Target: 5'- --uGGUCGcgGCGCGcCGCCGCgaggccggcgugcgCGGACAc -3' miRNA: 3'- gcuCCAGU--UGUGC-GUGGCGa-------------GCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 86654 | 0.7 | 0.694238 |
Target: 5'- gGAGGcgcUCAcGCGCGCGCUGCUCucGACGg -3' miRNA: 3'- gCUCC---AGU-UGUGCGUGGCGAGc-CUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 85885 | 0.68 | 0.807562 |
Target: 5'- aCGAGGUCAucgcggcGCACGaCGCCGUggcCGuGCAg -3' miRNA: 3'- -GCUCCAGU-------UGUGC-GUGGCGa--GCcUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 85706 | 0.67 | 0.86553 |
Target: 5'- aCGucGUCGugGCcUACCGCgCGGACGa -3' miRNA: 3'- -GCucCAGUugUGcGUGGCGaGCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 85430 | 0.76 | 0.377947 |
Target: 5'- aCGAGGUCAAC-CGCGCCGCggccgccuuccUGGGCc -3' miRNA: 3'- -GCUCCAGUUGuGCGUGGCGa----------GCCUGu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 84747 | 0.78 | 0.309209 |
Target: 5'- uCGAGGagaCGGCGCGCGCCGCcgaggaggCGGACGc -3' miRNA: 3'- -GCUCCa--GUUGUGCGUGGCGa-------GCCUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 84573 | 0.68 | 0.825661 |
Target: 5'- gCGAGGgccUCGACGCGCGCCucgcGCUgGcGCAc -3' miRNA: 3'- -GCUCC---AGUUGUGCGUGG----CGAgCcUGU- -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 84085 | 0.66 | 0.900209 |
Target: 5'- uCGAGcUCAAgACGUGCCGCUuccccCGGAa- -3' miRNA: 3'- -GCUCcAGUUgUGCGUGGCGA-----GCCUgu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 82927 | 0.67 | 0.872904 |
Target: 5'- -aAGG-CGcACACGCACUGC-CGGAUg -3' miRNA: 3'- gcUCCaGU-UGUGCGUGGCGaGCCUGu -5' |
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29422 | 3' | -56.2 | NC_006151.1 | + | 82656 | 0.69 | 0.762761 |
Target: 5'- gCGAGGgCGGCccacccugcgGCGCGCCGCgggcgaGGGCGg -3' miRNA: 3'- -GCUCCaGUUG----------UGCGUGGCGag----CCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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