miRNA display CGI


Results 61 - 80 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 3' -56.2 NC_006151.1 + 82298 0.7 0.724095
Target:  5'- gCGGGG-CAGCGCGCcuCCGCguccgcgaGGACGg -3'
miRNA:   3'- -GCUCCaGUUGUGCGu-GGCGag------CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 82179 0.71 0.633368
Target:  5'- cCGGGGgcgCGAUcauGCGCAuCCGCUCGG-CGg -3'
miRNA:   3'- -GCUCCa--GUUG---UGCGU-GGCGAGCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 81908 0.71 0.653749
Target:  5'- --cGGUCGcgGCGCGCCGCcUCGGAgAa -3'
miRNA:   3'- gcuCCAGUugUGCGUGGCG-AGCCUgU- -5'
29422 3' -56.2 NC_006151.1 + 81429 0.68 0.817134
Target:  5'- cCGAGGUCGcgGCgcagcgagacgGCGCACgGCgagaGGACGu -3'
miRNA:   3'- -GCUCCAGU--UG-----------UGCGUGgCGag--CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 75607 0.81 0.201169
Target:  5'- aCGAGGUCGGCGCGCACgCGCgccgagcccaCGGGCu -3'
miRNA:   3'- -GCUCCAGUUGUGCGUG-GCGa---------GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 73599 0.75 0.429149
Target:  5'- cCGGGGUgCAGCugGCGCCGCagcUGGugGg -3'
miRNA:   3'- -GCUCCA-GUUGugCGUGGCGa--GCCugU- -5'
29422 3' -56.2 NC_006151.1 + 73383 0.66 0.906469
Target:  5'- aCGGGGgcgcgCAGCGCGgcCGCCGCguacgCGGcCGu -3'
miRNA:   3'- -GCUCCa----GUUGUGC--GUGGCGa----GCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 71072 0.66 0.906469
Target:  5'- cCGuGGUCuucuaccacCACgGCGCCGCgggcgCGGGCGc -3'
miRNA:   3'- -GCuCCAGuu-------GUG-CGUGGCGa----GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 70653 0.68 0.80844
Target:  5'- gCGAGG-CGcccguccucACGCGCGCCGC-CGG-CGa -3'
miRNA:   3'- -GCUCCaGU---------UGUGCGUGGCGaGCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 68076 0.66 0.900209
Target:  5'- -cAGGUCGGCGgGCAgCGcCUCGaGGCu -3'
miRNA:   3'- gcUCCAGUUGUgCGUgGC-GAGC-CUGu -5'
29422 3' -56.2 NC_006151.1 + 67870 0.68 0.80844
Target:  5'- cCGAGGUgGcGCGCGCGCCaGCccgCgGGGCAc -3'
miRNA:   3'- -GCUCCAgU-UGUGCGUGG-CGa--G-CCUGU- -5'
29422 3' -56.2 NC_006151.1 + 67461 0.73 0.522742
Target:  5'- gGGGGUCGcagaGCGCGCGCaGCagCGGGCAc -3'
miRNA:   3'- gCUCCAGU----UGUGCGUGgCGa-GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 66545 0.69 0.772162
Target:  5'- uCGGGGgcgcgcgCGGC-CGCGCCGCcgUGGACc -3'
miRNA:   3'- -GCUCCa------GUUGuGCGUGGCGa-GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 65647 0.66 0.912495
Target:  5'- uGAGGUCGAggguCGCGUACUGCaggUCGuccGGCAc -3'
miRNA:   3'- gCUCCAGUU----GUGCGUGGCG---AGC---CUGU- -5'
29422 3' -56.2 NC_006151.1 + 64554 0.74 0.493726
Target:  5'- gCGAGGcCGugGCGCGCCaGCUC-GACGa -3'
miRNA:   3'- -GCUCCaGUugUGCGUGG-CGAGcCUGU- -5'
29422 3' -56.2 NC_006151.1 + 64462 0.71 0.663918
Target:  5'- gGAuGG-CGGCGCGCGCCGC-CGcGGCGg -3'
miRNA:   3'- gCU-CCaGUUGUGCGUGGCGaGC-CUGU- -5'
29422 3' -56.2 NC_006151.1 + 63790 0.68 0.825661
Target:  5'- gCGGGGUCGGCcgucgccaGCGCcUCGC-CGGGCc -3'
miRNA:   3'- -GCUCCAGUUG--------UGCGuGGCGaGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 62096 0.67 0.850164
Target:  5'- gCGcGGUCGGCcuggGCGCgGCCGUggUCGGGCu -3'
miRNA:   3'- -GCuCCAGUUG----UGCG-UGGCG--AGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 61647 0.67 0.872904
Target:  5'- gCGGcGuGUgGACGCGCcaGCCGCUCGuGGCc -3'
miRNA:   3'- -GCU-C-CAgUUGUGCG--UGGCGAGC-CUGu -5'
29422 3' -56.2 NC_006151.1 + 60470 0.66 0.880767
Target:  5'- gGAGGgcgugaAGCGCGCGCagaagcgcgccacgaGCUCGGAgAa -3'
miRNA:   3'- gCUCCag----UUGUGCGUGg--------------CGAGCCUgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.