miRNA display CGI


Results 81 - 100 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 3' -56.2 NC_006151.1 + 60076 0.68 0.799587
Target:  5'- aGAGGcgCAuccCGCGCGCCGCcgcgaacgcCGGGCGg -3'
miRNA:   3'- gCUCCa-GUu--GUGCGUGGCGa--------GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 59731 0.68 0.794203
Target:  5'- aCGGGGUUggcgAGCGCGCGCagcaGCuccugcagcucguccUCGGGCAc -3'
miRNA:   3'- -GCUCCAG----UUGUGCGUGg---CG---------------AGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 58123 0.66 0.880063
Target:  5'- gCGGGGUCGcgucGCcCGCGCCGUacgCGGcCGc -3'
miRNA:   3'- -GCUCCAGU----UGuGCGUGGCGa--GCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 57490 0.75 0.429149
Target:  5'- uCGcAGG-CGACGCGCACgCGCUCGGccGCGg -3'
miRNA:   3'- -GC-UCCaGUUGUGCGUG-GCGAGCC--UGU- -5'
29422 3' -56.2 NC_006151.1 + 57232 0.66 0.906469
Target:  5'- uCGcAGG-CGGCGCGCGCgGcCUCGG-CGu -3'
miRNA:   3'- -GC-UCCaGUUGUGCGUGgC-GAGCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 57190 0.73 0.532562
Target:  5'- uCGGGGUCGugGCGCGaggcgaaggcCCGCUC-GACGa -3'
miRNA:   3'- -GCUCCAGUugUGCGU----------GGCGAGcCUGU- -5'
29422 3' -56.2 NC_006151.1 + 56567 0.66 0.89372
Target:  5'- -cGGG-CGACGCGcCGCCGCccgaCGGGCu -3'
miRNA:   3'- gcUCCaGUUGUGC-GUGGCGa---GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 55523 0.7 0.694238
Target:  5'- aCGAGGUCAucgacaucACGCGCGCCa--UGGGCGa -3'
miRNA:   3'- -GCUCCAGU--------UGUGCGUGGcgaGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 55469 0.7 0.694238
Target:  5'- cCGGGGg--GCGCGCGCCcgGCgccgCGGACGg -3'
miRNA:   3'- -GCUCCaguUGUGCGUGG--CGa---GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 55409 0.66 0.912495
Target:  5'- gCGAGca-GGCccuGCGCGCCGCgcaggCGGGCGc -3'
miRNA:   3'- -GCUCcagUUG---UGCGUGGCGa----GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 54633 0.66 0.89372
Target:  5'- cCGGGGggaagcggCGGCGCgaGCGCUGCgUGGACGa -3'
miRNA:   3'- -GCUCCa-------GUUGUG--CGUGGCGaGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 53627 0.66 0.910113
Target:  5'- -cAGGUCGcgcuucugcagcuCGCGCACCGUcggCGGGCu -3'
miRNA:   3'- gcUCCAGUu------------GUGCGUGGCGa--GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 49220 0.69 0.743621
Target:  5'- gCGGGGUCcccggcuccCACGCcCCGCUCGGcuggGCGc -3'
miRNA:   3'- -GCUCCAGuu-------GUGCGuGGCGAGCC----UGU- -5'
29422 3' -56.2 NC_006151.1 + 46741 0.68 0.80844
Target:  5'- cCGGGGUCGgcgaACAC-CGCCGCUUcGGCu -3'
miRNA:   3'- -GCUCCAGU----UGUGcGUGGCGAGcCUGu -5'
29422 3' -56.2 NC_006151.1 + 45442 0.75 0.411627
Target:  5'- gCGGGcGUC-GCACGCACCGCg-GGGCGg -3'
miRNA:   3'- -GCUC-CAGuUGUGCGUGGCGagCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 45071 0.67 0.86553
Target:  5'- aCGGcuGGagAGCGCGCACCGCgCGGugugGCGu -3'
miRNA:   3'- -GCU--CCagUUGUGCGUGGCGaGCC----UGU- -5'
29422 3' -56.2 NC_006151.1 + 40148 0.67 0.872904
Target:  5'- gCGAcGGcCGGCccCGCGgcCCGCUCGGGCc -3'
miRNA:   3'- -GCU-CCaGUUGu-GCGU--GGCGAGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 39750 0.68 0.80844
Target:  5'- uCGGGGacccggacuUUGACGCggGCGCCGCcuUCGGGCAc -3'
miRNA:   3'- -GCUCC---------AGUUGUG--CGUGGCG--AGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 38770 0.75 0.447104
Target:  5'- cCGAGGaCGACcggcuccgGCGC-CCGCUCGGGCc -3'
miRNA:   3'- -GCUCCaGUUG--------UGCGuGGCGAGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 38681 0.71 0.643563
Target:  5'- cCGGGGgcccCGGCGCaaGCGCCGCucccUCGGACu -3'
miRNA:   3'- -GCUCCa---GUUGUG--CGUGGCG----AGCCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.