miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 3' -56.2 NC_006151.1 + 17087 0.66 0.900209
Target:  5'- -cGGGUCAgGCGCGCGCCcgUCGGGg- -3'
miRNA:   3'- gcUCCAGU-UGUGCGUGGcgAGCCUgu -5'
29422 3' -56.2 NC_006151.1 + 3448 0.66 0.900209
Target:  5'- cCGccGUCGGgCGCGgGgUGCUCGGGCAu -3'
miRNA:   3'- -GCucCAGUU-GUGCgUgGCGAGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 68076 0.66 0.900209
Target:  5'- -cAGGUCGGCGgGCAgCGcCUCGaGGCu -3'
miRNA:   3'- gcUCCAGUUGUgCGUgGC-GAGC-CUGu -5'
29422 3' -56.2 NC_006151.1 + 84085 0.66 0.900209
Target:  5'- uCGAGcUCAAgACGUGCCGCUuccccCGGAa- -3'
miRNA:   3'- -GCUCcAGUUgUGCGUGGCGA-----GCCUgu -5'
29422 3' -56.2 NC_006151.1 + 56567 0.66 0.89372
Target:  5'- -cGGG-CGACGCGcCGCCGCccgaCGGGCu -3'
miRNA:   3'- gcUCCaGUUGUGC-GUGGCGa---GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 106503 0.66 0.89372
Target:  5'- aGcGGcUGGCGCGCGCCGUgcCGGGCGc -3'
miRNA:   3'- gCuCCaGUUGUGCGUGGCGa-GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 54633 0.66 0.89372
Target:  5'- cCGGGGggaagcggCGGCGCgaGCGCUGCgUGGACGa -3'
miRNA:   3'- -GCUCCa-------GUUGUG--CGUGGCGaGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 88902 0.66 0.882866
Target:  5'- uCGGGGUCGGCgucgggcgagcggaaGCGC-CCGCggcgguagaagCGGACc -3'
miRNA:   3'- -GCUCCAGUUG---------------UGCGuGGCGa----------GCCUGu -5'
29422 3' -56.2 NC_006151.1 + 60470 0.66 0.880767
Target:  5'- gGAGGgcgugaAGCGCGCGCagaagcgcgccacgaGCUCGGAgAa -3'
miRNA:   3'- gCUCCag----UUGUGCGUGg--------------CGAGCCUgU- -5'
29422 3' -56.2 NC_006151.1 + 58123 0.66 0.880063
Target:  5'- gCGGGGUCGcgucGCcCGCGCCGUacgCGGcCGc -3'
miRNA:   3'- -GCUCCAGU----UGuGCGUGGCGa--GCCuGU- -5'
29422 3' -56.2 NC_006151.1 + 95291 0.66 0.880063
Target:  5'- aCGGcGG-CGACGCGCGCgGCcCGGcGCAg -3'
miRNA:   3'- -GCU-CCaGUUGUGCGUGgCGaGCC-UGU- -5'
29422 3' -56.2 NC_006151.1 + 103575 0.66 0.880063
Target:  5'- --uGGUCAACGCGC-UCGC--GGACAa -3'
miRNA:   3'- gcuCCAGUUGUGCGuGGCGagCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 129344 0.66 0.880063
Target:  5'- cCGGGG-CGGCcgGCGCGCCgauaaaugcGCUCGGGg- -3'
miRNA:   3'- -GCUCCaGUUG--UGCGUGG---------CGAGCCUgu -5'
29422 3' -56.2 NC_006151.1 + 104896 0.66 0.877938
Target:  5'- gCGAGGUgguggacgcggcggCGGCGCGCgACCGCgacgGGGCc -3'
miRNA:   3'- -GCUCCA--------------GUUGUGCG-UGGCGag--CCUGu -5'
29422 3' -56.2 NC_006151.1 + 26966 0.67 0.875793
Target:  5'- uGAGcucgcgCAGCGCGCugCGCagcggggcgcucugcUCGGGCGa -3'
miRNA:   3'- gCUCca----GUUGUGCGugGCG---------------AGCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 118439 0.67 0.872904
Target:  5'- gGAGGUguGCGCGCggcucgGCCugGCcgCGGACGc -3'
miRNA:   3'- gCUCCAguUGUGCG------UGG--CGa-GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 40148 0.67 0.872904
Target:  5'- gCGAcGGcCGGCccCGCGgcCCGCUCGGGCc -3'
miRNA:   3'- -GCU-CCaGUUGu-GCGU--GGCGAGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 82927 0.67 0.872904
Target:  5'- -aAGG-CGcACACGCACUGC-CGGAUg -3'
miRNA:   3'- gcUCCaGU-UGUGCGUGGCGaGCCUGu -5'
29422 3' -56.2 NC_006151.1 + 123257 0.67 0.872904
Target:  5'- gCGAGGcCGccgcgcgcGCGgGCACCGUcgUGGACGa -3'
miRNA:   3'- -GCUCCaGU--------UGUgCGUGGCGa-GCCUGU- -5'
29422 3' -56.2 NC_006151.1 + 61647 0.67 0.872904
Target:  5'- gCGGcGuGUgGACGCGCcaGCCGCUCGuGGCc -3'
miRNA:   3'- -GCU-C-CAgUUGUGCG--UGGCGAGC-CUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.