miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 5' -65.1 NC_006151.1 + 23016 0.71 0.224847
Target:  5'- gGGCGCGGGGGUGgUGgagGCGGCGa--- -3'
miRNA:   3'- -CUGCGCCCCCGCgACg--CGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 61764 0.7 0.264183
Target:  5'- -uCGCGGGGGcCGUggUGCuGCGGCGcGAg -3'
miRNA:   3'- cuGCGCCCCC-GCG--ACG-CGCCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 98205 0.7 0.264183
Target:  5'- cGCGCGGGGuCGagUGCGCGGCGg--- -3'
miRNA:   3'- cUGCGCCCCcGCg-ACGCGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 63512 0.7 0.276403
Target:  5'- --gGUGGGGGCGC-GCGgGGCGgucgGGg -3'
miRNA:   3'- cugCGCCCCCGCGaCGCgCCGCa---CUa -5'
29422 5' -65.1 NC_006151.1 + 11698 0.7 0.276403
Target:  5'- -cCGCGGGacGGCGC-GUGCGGCGcgGAa -3'
miRNA:   3'- cuGCGCCC--CCGCGaCGCGCCGCa-CUa -5'
29422 5' -65.1 NC_006151.1 + 73045 0.7 0.282681
Target:  5'- uGGCGCgguGGGGGUGCgcgggguccGCGUGGCuGUGGUc -3'
miRNA:   3'- -CUGCG---CCCCCGCGa--------CGCGCCG-CACUA- -5'
29422 5' -65.1 NC_006151.1 + 88020 0.7 0.258239
Target:  5'- gGACGCGGGGGagGCgucguaGCGCuGCGUGu- -3'
miRNA:   3'- -CUGCGCCCCCg-CGa-----CGCGcCGCACua -5'
29422 5' -65.1 NC_006151.1 + 78046 0.7 0.246112
Target:  5'- cGACGCGGcgcaucuGGGCGaC-GCGCGGCGgGAg -3'
miRNA:   3'- -CUGCGCC-------CCCGC-GaCGCGCCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 59358 0.7 0.246679
Target:  5'- cGCGCGcacGGGGCGCcGCGCGGcCGUc-- -3'
miRNA:   3'- cUGCGC---CCCCGCGaCGCGCC-GCAcua -5'
29422 5' -65.1 NC_006151.1 + 114322 0.7 0.252404
Target:  5'- cGCGaCGGGGGC-CUGCGCGaCGUGc- -3'
miRNA:   3'- cUGC-GCCCCCGcGACGCGCcGCACua -5'
29422 5' -65.1 NC_006151.1 + 66537 0.7 0.252404
Target:  5'- cGCGCucuucGGGGGCGC-GCGCGGCcgcgccgccGUGGa -3'
miRNA:   3'- cUGCG-----CCCCCGCGaCGCGCCG---------CACUa -5'
29422 5' -65.1 NC_006151.1 + 129235 0.69 0.315075
Target:  5'- uGGCGCGGGuGCGCcccucggUGaCGCGGCGcGAg -3'
miRNA:   3'- -CUGCGCCCcCGCG-------AC-GCGCCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 135121 0.69 0.315764
Target:  5'- cGCGCGGGGcGgGCUGgGCGGgGa--- -3'
miRNA:   3'- cUGCGCCCC-CgCGACgCGCCgCacua -5'
29422 5' -65.1 NC_006151.1 + 99554 0.69 0.315764
Target:  5'- cACGUGGGcgcGGCGC-GCGCGGCGcUGc- -3'
miRNA:   3'- cUGCGCCC---CCGCGaCGCGCCGC-ACua -5'
29422 5' -65.1 NC_006151.1 + 68768 0.69 0.322722
Target:  5'- --gGCGGuGGCGC-GCGCGGCGaGGUg -3'
miRNA:   3'- cugCGCCcCCGCGaCGCGCCGCaCUA- -5'
29422 5' -65.1 NC_006151.1 + 10202 0.69 0.289071
Target:  5'- cGGCGCGGGcGGCgGCUGCagagGCGGCugcgGAc -3'
miRNA:   3'- -CUGCGCCC-CCG-CGACG----CGCCGca--CUa -5'
29422 5' -65.1 NC_006151.1 + 8078 0.69 0.295574
Target:  5'- --gGCGacGGGGCGUgGCGgGGCGUGGc -3'
miRNA:   3'- cugCGC--CCCCGCGaCGCgCCGCACUa -5'
29422 5' -65.1 NC_006151.1 + 104006 0.69 0.295574
Target:  5'- -cCGUGGaGGcGCGCcGCGCGGCG-GAg -3'
miRNA:   3'- cuGCGCC-CC-CGCGaCGCGCCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 104276 0.69 0.322722
Target:  5'- cGGCgGCGGGcccgccgcugcaGGCGCUGCaGCGGC-UGAc -3'
miRNA:   3'- -CUG-CGCCC------------CCGCGACG-CGCCGcACUa -5'
29422 5' -65.1 NC_006151.1 + 101289 0.69 0.315764
Target:  5'- gGGCGCGGGcGGCGCcGCGCuGCa---- -3'
miRNA:   3'- -CUGCGCCC-CCGCGaCGCGcCGcacua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.