Results 81 - 99 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29422 | 5' | -65.1 | NC_006151.1 | + | 3118 | 0.66 | 0.475686 |
Target: 5'- cGGCGCGGGucccaggccgGGCGCgggGCGCccucGGCGg--- -3' miRNA: 3'- -CUGCGCCC----------CCGCGa--CGCG----CCGCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 118157 | 0.66 | 0.475686 |
Target: 5'- --gGCGGuGGCGCcgcuggUGCGCGGCcUGAc -3' miRNA: 3'- cugCGCCcCCGCG------ACGCGCCGcACUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 125539 | 0.66 | 0.475686 |
Target: 5'- uGCGUGGaGGUGC-GCgGCGGCGUGu- -3' miRNA: 3'- cUGCGCCcCCGCGaCG-CGCCGCACua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 17395 | 0.66 | 0.475686 |
Target: 5'- cACGaCGGGGcGCGUggcGCGCGGCa---- -3' miRNA: 3'- cUGC-GCCCC-CGCGa--CGCGCCGcacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 50462 | 0.66 | 0.484725 |
Target: 5'- -cCGCGGGcgcucGCGCcaGCGCGGCGcGAc -3' miRNA: 3'- cuGCGCCCc----CGCGa-CGCGCCGCaCUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 39269 | 0.66 | 0.457865 |
Target: 5'- aACGCccaGGGGGUGCUGCugcucuCGGCGcGGg -3' miRNA: 3'- cUGCG---CCCCCGCGACGc-----GCCGCaCUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 136993 | 0.66 | 0.475686 |
Target: 5'- --gGCGGcGGGCGCgcGCGCacGGCGcUGGg -3' miRNA: 3'- cugCGCC-CCCGCGa-CGCG--CCGC-ACUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 104062 | 0.66 | 0.457865 |
Target: 5'- cGCGCGGccgacgcGGCGCUGCGCcGCGccGAg -3' miRNA: 3'- cUGCGCCc------CCGCGACGCGcCGCa-CUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 122488 | 0.66 | 0.457865 |
Target: 5'- gGACGCGGGcgagacGGCGCgccgGCGC-GCG-GAc -3' miRNA: 3'- -CUGCGCCC------CCGCGa---CGCGcCGCaCUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 76657 | 0.66 | 0.440408 |
Target: 5'- cGCGUGcGGGCGCgugUGCGCGGuCGcUGGg -3' miRNA: 3'- cUGCGCcCCCGCG---ACGCGCC-GC-ACUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 118433 | 0.66 | 0.440408 |
Target: 5'- gGGCGCGGaGGuGUGC-GCGCGGCu---- -3' miRNA: 3'- -CUGCGCC-CC-CGCGaCGCGCCGcacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 97350 | 0.66 | 0.449089 |
Target: 5'- uACGCGGGGaaggccgcggcgGCgGCggGCGCGGCGgGGg -3' miRNA: 3'- cUGCGCCCC------------CG-CGa-CGCGCCGCaCUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 70092 | 0.66 | 0.449089 |
Target: 5'- cGCGUGGGcGGCGaaggGCGCGaGCG-GGUc -3' miRNA: 3'- cUGCGCCC-CCGCga--CGCGC-CGCaCUA- -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 105031 | 0.66 | 0.449089 |
Target: 5'- uGACGCaGGcGGCGCUGCugcuCGGCGc--- -3' miRNA: 3'- -CUGCGcCC-CCGCGACGc---GCCGCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 122392 | 0.66 | 0.449089 |
Target: 5'- -cCGCGGGcGcGCGCUG-GCGGCGc--- -3' miRNA: 3'- cuGCGCCC-C-CGCGACgCGCCGCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 33076 | 0.66 | 0.457865 |
Target: 5'- aGACGgaGGGGGCGaggGCG-GGCGgugGAg -3' miRNA: 3'- -CUGCg-CCCCCGCga-CGCgCCGCa--CUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 21313 | 0.66 | 0.457865 |
Target: 5'- --aGCGGuGGCGCgagacgcccgGCGCGGCGggGGUc -3' miRNA: 3'- cugCGCCcCCGCGa---------CGCGCCGCa-CUA- -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 62094 | 0.66 | 0.457865 |
Target: 5'- cGGCGCGGucGGC-CUggGCGCGGcCGUGGUc -3' miRNA: 3'- -CUGCGCCc-CCGcGA--CGCGCC-GCACUA- -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 113416 | 0.66 | 0.484725 |
Target: 5'- cGCGCGcacuGGcuGGCGCUgcgccgcuuccgGCGCGGCGUGc- -3' miRNA: 3'- cUGCGC----CC--CCGCGA------------CGCGCCGCACua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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