Results 61 - 80 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29422 | 5' | -65.1 | NC_006151.1 | + | 117191 | 0.67 | 0.38324 |
Target: 5'- -cCGCcgGGGGGCGUcguaguaguagacggGCGCGGCGUcGAc -3' miRNA: 3'- cuGCG--CCCCCGCGa--------------CGCGCCGCA-CUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 88301 | 0.67 | 0.385621 |
Target: 5'- aGACGUGGGGGCGCagggccucggagaaGCGCuGCGa--- -3' miRNA: 3'- -CUGCGCCCCCGCGa-------------CGCGcCGCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 39338 | 0.67 | 0.390413 |
Target: 5'- -uCGCGGcucGGCGCgGCGCGGCGc--- -3' miRNA: 3'- cuGCGCCc--CCGCGaCGCGCCGCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 15052 | 0.67 | 0.390413 |
Target: 5'- cGCGCGGGgccccGGCGCcuucUGCGCGGCc---- -3' miRNA: 3'- cUGCGCCC-----CCGCG----ACGCGCCGcacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 64863 | 0.67 | 0.390413 |
Target: 5'- --gGCGGaGGGcCGCUGCcCGGCGgGAg -3' miRNA: 3'- cugCGCC-CCC-GCGACGcGCCGCaCUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 103788 | 0.67 | 0.396053 |
Target: 5'- aGCGCuGGcGGCGCUGCaggccgcgcugucgGCGGcCGUGGc -3' miRNA: 3'- cUGCGcCC-CCGCGACG--------------CGCC-GCACUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 11790 | 0.67 | 0.398486 |
Target: 5'- gGGCGCGuGGGCGagagGgGCGGgGUGGg -3' miRNA: 3'- -CUGCGCcCCCGCga--CgCGCCgCACUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 111443 | 0.67 | 0.398486 |
Target: 5'- cGGCGCGGuccaggaGGCGCUGCGUcugcgaGGCGUc-- -3' miRNA: 3'- -CUGCGCCc------CCGCGACGCG------CCGCAcua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 73383 | 0.67 | 0.406665 |
Target: 5'- ---aCGGGGGCGCgcaGCGCGGCc---- -3' miRNA: 3'- cugcGCCCCCGCGa--CGCGCCGcacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 54642 | 0.67 | 0.406665 |
Target: 5'- --aGCGGcGGCGCgaGCGCuGCGUGGa -3' miRNA: 3'- cugCGCCcCCGCGa-CGCGcCGCACUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 89102 | 0.67 | 0.414949 |
Target: 5'- -cCGCGGGGGCuucCUGCGCgagaccgagGGCGgcggGAc -3' miRNA: 3'- cuGCGCCCCCGc--GACGCG---------CCGCa---CUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 122952 | 0.67 | 0.423335 |
Target: 5'- cGGCGCcgcgGGGGGCGCgGaCGCcGGCGa--- -3' miRNA: 3'- -CUGCG----CCCCCGCGaC-GCG-CCGCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 54412 | 0.67 | 0.423335 |
Target: 5'- cGGCGCcGaGGCGCUgGCGCGGCGc--- -3' miRNA: 3'- -CUGCGcCcCCGCGA-CGCGCCGCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 131123 | 0.67 | 0.423335 |
Target: 5'- cGGCGCGGGaGGcCGCgGCGCcGCGg--- -3' miRNA: 3'- -CUGCGCCC-CC-GCGaCGCGcCGCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 17109 | 0.67 | 0.423335 |
Target: 5'- gGGCGcCGGGGGCuccggcggcgguGCUGCGggaGGCGgccagGAg -3' miRNA: 3'- -CUGC-GCCCCCG------------CGACGCg--CCGCa----CUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 90832 | 0.67 | 0.423335 |
Target: 5'- cACGCugaacaGGGGCGcCUGcCGCGGCGUc-- -3' miRNA: 3'- cUGCGc-----CCCCGC-GAC-GCGCCGCAcua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 76657 | 0.66 | 0.440408 |
Target: 5'- cGCGUGcGGGCGCgugUGCGCGGuCGcUGGg -3' miRNA: 3'- cUGCGCcCCCGCG---ACGCGCC-GC-ACUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 118433 | 0.66 | 0.440408 |
Target: 5'- gGGCGCGGaGGuGUGC-GCGCGGCu---- -3' miRNA: 3'- -CUGCGCC-CC-CGCGaCGCGCCGcacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 97350 | 0.66 | 0.449089 |
Target: 5'- uACGCGGGGaaggccgcggcgGCgGCggGCGCGGCGgGGg -3' miRNA: 3'- cUGCGCCCC------------CG-CGa-CGCGCCGCaCUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 70092 | 0.66 | 0.449089 |
Target: 5'- cGCGUGGGcGGCGaaggGCGCGaGCG-GGUc -3' miRNA: 3'- cUGCGCCC-CCGCga--CGCGC-CGCaCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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