Results 61 - 80 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29422 | 5' | -65.1 | NC_006151.1 | + | 135121 | 0.69 | 0.315764 |
Target: 5'- cGCGCGGGGcGgGCUGgGCGGgGa--- -3' miRNA: 3'- cUGCGCCCC-CgCGACgCGCCgCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 99554 | 0.69 | 0.315764 |
Target: 5'- cACGUGGGcgcGGCGC-GCGCGGCGcUGc- -3' miRNA: 3'- cUGCGCCC---CCGCGaCGCGCCGC-ACua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 129235 | 0.69 | 0.315075 |
Target: 5'- uGGCGCGGGuGCGCcccucggUGaCGCGGCGcGAg -3' miRNA: 3'- -CUGCGCCCcCGCG-------AC-GCGCCGCaCUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 66930 | 0.69 | 0.308921 |
Target: 5'- gGAgGCGGGGGCGaggGCaaagGCGGCGgcgGGc -3' miRNA: 3'- -CUgCGCCCCCGCga-CG----CGCCGCa--CUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 3245 | 0.69 | 0.302191 |
Target: 5'- cGGCGCGgcggcggagcGGGGCGCcgcggcGCGCGGCGa--- -3' miRNA: 3'- -CUGCGC----------CCCCGCGa-----CGCGCCGCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 8078 | 0.69 | 0.295574 |
Target: 5'- --gGCGacGGGGCGUgGCGgGGCGUGGc -3' miRNA: 3'- cugCGC--CCCCGCGaCGCgCCGCACUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 104006 | 0.69 | 0.295574 |
Target: 5'- -cCGUGGaGGcGCGCcGCGCGGCG-GAg -3' miRNA: 3'- cuGCGCC-CC-CGCGaCGCGCCGCaCUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 10202 | 0.69 | 0.289071 |
Target: 5'- cGGCGCGGGcGGCgGCUGCagagGCGGCugcgGAc -3' miRNA: 3'- -CUGCGCCC-CCG-CGACG----CGCCGca--CUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 73045 | 0.7 | 0.282681 |
Target: 5'- uGGCGCgguGGGGGUGCgcgggguccGCGUGGCuGUGGUc -3' miRNA: 3'- -CUGCG---CCCCCGCGa--------CGCGCCG-CACUA- -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 11698 | 0.7 | 0.276403 |
Target: 5'- -cCGCGGGacGGCGC-GUGCGGCGcgGAa -3' miRNA: 3'- cuGCGCCC--CCGCGaCGCGCCGCa-CUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 63512 | 0.7 | 0.276403 |
Target: 5'- --gGUGGGGGCGC-GCGgGGCGgucgGGg -3' miRNA: 3'- cugCGCCCCCGCGaCGCgCCGCa---CUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 61764 | 0.7 | 0.264183 |
Target: 5'- -uCGCGGGGGcCGUggUGCuGCGGCGcGAg -3' miRNA: 3'- cuGCGCCCCC-GCG--ACG-CGCCGCaCUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 98205 | 0.7 | 0.264183 |
Target: 5'- cGCGCGGGGuCGagUGCGCGGCGg--- -3' miRNA: 3'- cUGCGCCCCcGCg-ACGCGCCGCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 88020 | 0.7 | 0.258239 |
Target: 5'- gGACGCGGGGGagGCgucguaGCGCuGCGUGu- -3' miRNA: 3'- -CUGCGCCCCCg-CGa-----CGCGcCGCACua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 66537 | 0.7 | 0.252404 |
Target: 5'- cGCGCucuucGGGGGCGC-GCGCGGCcgcgccgccGUGGa -3' miRNA: 3'- cUGCG-----CCCCCGCGaCGCGCCG---------CACUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 114322 | 0.7 | 0.252404 |
Target: 5'- cGCGaCGGGGGC-CUGCGCGaCGUGc- -3' miRNA: 3'- cUGC-GCCCCCGcGACGCGCcGCACua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 59358 | 0.7 | 0.246679 |
Target: 5'- cGCGCGcacGGGGCGCcGCGCGGcCGUc-- -3' miRNA: 3'- cUGCGC---CCCCGCGaCGCGCC-GCAcua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 78046 | 0.7 | 0.246112 |
Target: 5'- cGACGCGGcgcaucuGGGCGaC-GCGCGGCGgGAg -3' miRNA: 3'- -CUGCGCC-------CCCGC-GaCGCGCCGCaCUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 64769 | 0.71 | 0.241061 |
Target: 5'- uGCGCGGGGGCugGUUGcCGgGGCGcGAg -3' miRNA: 3'- cUGCGCCCCCG--CGAC-GCgCCGCaCUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 20625 | 0.71 | 0.241061 |
Target: 5'- gGugGUGGGGGCGCccccUGgGCGGCa---- -3' miRNA: 3'- -CugCGCCCCCGCG----ACgCGCCGcacua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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