miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 5' -65.1 NC_006151.1 + 66930 0.69 0.308921
Target:  5'- gGAgGCGGGGGCGaggGCaaagGCGGCGgcgGGc -3'
miRNA:   3'- -CUgCGCCCCCGCga-CG----CGCCGCa--CUa -5'
29422 5' -65.1 NC_006151.1 + 68768 0.69 0.322722
Target:  5'- --gGCGGuGGCGC-GCGCGGCGaGGUg -3'
miRNA:   3'- cugCGCCcCCGCGaCGCGCCGCaCUA- -5'
29422 5' -65.1 NC_006151.1 + 69973 0.72 0.186095
Target:  5'- -cCGCGcGGGCGCUGCaGCGGCGg--- -3'
miRNA:   3'- cuGCGCcCCCGCGACG-CGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 70092 0.66 0.449089
Target:  5'- cGCGUGGGcGGCGaaggGCGCGaGCG-GGUc -3'
miRNA:   3'- cUGCGCCC-CCGCga--CGCGC-CGCaCUA- -5'
29422 5' -65.1 NC_006151.1 + 73045 0.7 0.282681
Target:  5'- uGGCGCgguGGGGGUGCgcgggguccGCGUGGCuGUGGUc -3'
miRNA:   3'- -CUGCG---CCCCCGCGa--------CGCGCCG-CACUA- -5'
29422 5' -65.1 NC_006151.1 + 73383 0.67 0.406665
Target:  5'- ---aCGGGGGCGCgcaGCGCGGCc---- -3'
miRNA:   3'- cugcGCCCCCGCGa--CGCGCCGcacua -5'
29422 5' -65.1 NC_006151.1 + 74513 0.72 0.190596
Target:  5'- --aGCGGGGGCaGCaGCGUGGCGUc-- -3'
miRNA:   3'- cugCGCCCCCG-CGaCGCGCCGCAcua -5'
29422 5' -65.1 NC_006151.1 + 75392 0.71 0.216584
Target:  5'- cGGCGCGGGgcgGGUGCgUGCGCggguccgggaggcccGGCGUGGg -3'
miRNA:   3'- -CUGCGCCC---CCGCG-ACGCG---------------CCGCACUa -5'
29422 5' -65.1 NC_006151.1 + 76657 0.66 0.440408
Target:  5'- cGCGUGcGGGCGCgugUGCGCGGuCGcUGGg -3'
miRNA:   3'- cUGCGCcCCCGCG---ACGCGCC-GC-ACUa -5'
29422 5' -65.1 NC_006151.1 + 78046 0.7 0.246112
Target:  5'- cGACGCGGcgcaucuGGGCGaC-GCGCGGCGgGAg -3'
miRNA:   3'- -CUGCGCC-------CCCGC-GaCGCGCCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 82175 0.68 0.366845
Target:  5'- aGCGcCGGGGGCGCgaucaUGCGCauccgcucGGCG-GAg -3'
miRNA:   3'- cUGC-GCCCCCGCG-----ACGCG--------CCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 82425 0.66 0.475686
Target:  5'- aGAgGCGcGGGCGCUcGCGCgGGCGcUGc- -3'
miRNA:   3'- -CUgCGCcCCCGCGA-CGCG-CCGC-ACua -5'
29422 5' -65.1 NC_006151.1 + 87879 0.68 0.366845
Target:  5'- cGACGUGGGGGgggaaCGC-GCGgGGCGUc-- -3'
miRNA:   3'- -CUGCGCCCCC-----GCGaCGCgCCGCAcua -5'
29422 5' -65.1 NC_006151.1 + 88020 0.7 0.258239
Target:  5'- gGACGCGGGGGagGCgucguaGCGCuGCGUGu- -3'
miRNA:   3'- -CUGCGCCCCCg-CGa-----CGCGcCGCACua -5'
29422 5' -65.1 NC_006151.1 + 88301 0.67 0.385621
Target:  5'- aGACGUGGGGGCGCagggccucggagaaGCGCuGCGa--- -3'
miRNA:   3'- -CUGCGCCCCCGCGa-------------CGCGcCGCacua -5'
29422 5' -65.1 NC_006151.1 + 89102 0.67 0.414949
Target:  5'- -cCGCGGGGGCuucCUGCGCgagaccgagGGCGgcggGAc -3'
miRNA:   3'- cuGCGCCCCCGc--GACGCG---------CCGCa---CUa -5'
29422 5' -65.1 NC_006151.1 + 89506 0.67 0.382448
Target:  5'- cGCGCGGGuguGGCGCa--GCGGaCGUGGUc -3'
miRNA:   3'- cUGCGCCC---CCGCGacgCGCC-GCACUA- -5'
29422 5' -65.1 NC_006151.1 + 90832 0.67 0.423335
Target:  5'- cACGCugaacaGGGGCGcCUGcCGCGGCGUc-- -3'
miRNA:   3'- cUGCGc-----CCCCGC-GAC-GCGCCGCAcua -5'
29422 5' -65.1 NC_006151.1 + 95303 0.68 0.35921
Target:  5'- cGCGCGGcccGGCGCaGCGCGGCa---- -3'
miRNA:   3'- cUGCGCCc--CCGCGaCGCGCCGcacua -5'
29422 5' -65.1 NC_006151.1 + 96732 0.68 0.366845
Target:  5'- gGAgGCGGcGGGCGCgacgacggagGCcaugGCGGCGUGu- -3'
miRNA:   3'- -CUgCGCC-CCCGCGa---------CG----CGCCGCACua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.