miRNA display CGI


Results 61 - 80 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 5' -65.1 NC_006151.1 + 97350 0.66 0.449089
Target:  5'- uACGCGGGGaaggccgcggcgGCgGCggGCGCGGCGgGGg -3'
miRNA:   3'- cUGCGCCCC------------CG-CGa-CGCGCCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 98205 0.7 0.264183
Target:  5'- cGCGCGGGGuCGagUGCGCGGCGg--- -3'
miRNA:   3'- cUGCGCCCCcGCg-ACGCGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 99554 0.69 0.315764
Target:  5'- cACGUGGGcgcGGCGC-GCGCGGCGcUGc- -3'
miRNA:   3'- cUGCGCCC---CCGCGaCGCGCCGC-ACua -5'
29422 5' -65.1 NC_006151.1 + 100422 1.05 0.000679
Target:  5'- cGACGCGGGGGCGCUGCGCGGCGUGAUg -3'
miRNA:   3'- -CUGCGCCCCCGCGACGCGCCGCACUA- -5'
29422 5' -65.1 NC_006151.1 + 100454 0.72 0.209568
Target:  5'- aGACGaCGGaGGCGCUGCGCGaGUGcGAg -3'
miRNA:   3'- -CUGC-GCCcCCGCGACGCGC-CGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 101289 0.69 0.315764
Target:  5'- gGGCGCGGGcGGCGCcGCGCuGCa---- -3'
miRNA:   3'- -CUGCGCCC-CCGCGaCGCGcCGcacua -5'
29422 5' -65.1 NC_006151.1 + 102686 0.8 0.049096
Target:  5'- gGACGCGGGGGCGCccgGCGCgGGCGg--- -3'
miRNA:   3'- -CUGCGCCCCCGCGa--CGCG-CCGCacua -5'
29422 5' -65.1 NC_006151.1 + 103630 0.68 0.366845
Target:  5'- cGACGCGGuGGCgGCgGCGCuGGCG-GAc -3'
miRNA:   3'- -CUGCGCCcCCG-CGaCGCG-CCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 103687 0.77 0.088597
Target:  5'- --gGCGGGGGUGCUGCGCGccgcCGUGGa -3'
miRNA:   3'- cugCGCCCCCGCGACGCGCc---GCACUa -5'
29422 5' -65.1 NC_006151.1 + 103788 0.67 0.396053
Target:  5'- aGCGCuGGcGGCGCUGCaggccgcgcugucgGCGGcCGUGGc -3'
miRNA:   3'- cUGCGcCC-CCGCGACG--------------CGCC-GCACUa -5'
29422 5' -65.1 NC_006151.1 + 104006 0.69 0.295574
Target:  5'- -cCGUGGaGGcGCGCcGCGCGGCG-GAg -3'
miRNA:   3'- cuGCGCC-CC-CGCGaCGCGCCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 104062 0.66 0.457865
Target:  5'- cGCGCGGccgacgcGGCGCUGCGCcGCGccGAg -3'
miRNA:   3'- cUGCGCCc------CCGCGACGCGcCGCa-CUa -5'
29422 5' -65.1 NC_006151.1 + 104276 0.69 0.322722
Target:  5'- cGGCgGCGGGcccgccgcugcaGGCGCUGCaGCGGC-UGAc -3'
miRNA:   3'- -CUG-CGCCC------------CCGCGACG-CGCCGcACUa -5'
29422 5' -65.1 NC_006151.1 + 105031 0.66 0.449089
Target:  5'- uGACGCaGGcGGCGCUGCugcuCGGCGc--- -3'
miRNA:   3'- -CUGCGcCC-CCGCGACGc---GCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 105689 0.68 0.374592
Target:  5'- cGGCGCGGGGccgaCGCcgGCGCGGCc---- -3'
miRNA:   3'- -CUGCGCCCCc---GCGa-CGCGCCGcacua -5'
29422 5' -65.1 NC_006151.1 + 106366 0.68 0.366845
Target:  5'- gGACGCGGGcGCGCgcccGcCGCGGCGc--- -3'
miRNA:   3'- -CUGCGCCCcCGCGa---C-GCGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 111443 0.67 0.398486
Target:  5'- cGGCGCGGuccaggaGGCGCUGCGUcugcgaGGCGUc-- -3'
miRNA:   3'- -CUGCGCCc------CCGCGACGCG------CCGCAcua -5'
29422 5' -65.1 NC_006151.1 + 113028 0.79 0.065213
Target:  5'- cGACGCGugcgccGGGUGCUGCGCGGCGgcgGAg -3'
miRNA:   3'- -CUGCGCc-----CCCGCGACGCGCCGCa--CUa -5'
29422 5' -65.1 NC_006151.1 + 113416 0.66 0.484725
Target:  5'- cGCGCGcacuGGcuGGCGCUgcgccgcuuccgGCGCGGCGUGc- -3'
miRNA:   3'- cUGCGC----CC--CCGCGA------------CGCGCCGCACua -5'
29422 5' -65.1 NC_006151.1 + 114322 0.7 0.252404
Target:  5'- cGCGaCGGGGGC-CUGCGCGaCGUGc- -3'
miRNA:   3'- cUGC-GCCCCCGcGACGCGCcGCACua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.