miRNA display CGI


Results 81 - 99 of 99 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 5' -65.1 NC_006151.1 + 117191 0.67 0.38324
Target:  5'- -cCGCcgGGGGGCGUcguaguaguagacggGCGCGGCGUcGAc -3'
miRNA:   3'- cuGCG--CCCCCGCGa--------------CGCGCCGCA-CUa -5'
29422 5' -65.1 NC_006151.1 + 118157 0.66 0.475686
Target:  5'- --gGCGGuGGCGCcgcuggUGCGCGGCcUGAc -3'
miRNA:   3'- cugCGCCcCCGCG------ACGCGCCGcACUa -5'
29422 5' -65.1 NC_006151.1 + 118433 0.66 0.440408
Target:  5'- gGGCGCGGaGGuGUGC-GCGCGGCu---- -3'
miRNA:   3'- -CUGCGCC-CC-CGCGaCGCGCCGcacua -5'
29422 5' -65.1 NC_006151.1 + 118783 0.76 0.105722
Target:  5'- gGACGCGGuGGCGCgcgGCGCGGCGc--- -3'
miRNA:   3'- -CUGCGCCcCCGCGa--CGCGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 122392 0.66 0.449089
Target:  5'- -cCGCGGGcGcGCGCUG-GCGGCGc--- -3'
miRNA:   3'- cuGCGCCC-C-CGCGACgCGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 122488 0.66 0.457865
Target:  5'- gGACGCGGGcgagacGGCGCgccgGCGC-GCG-GAc -3'
miRNA:   3'- -CUGCGCCC------CCGCGa---CGCGcCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 122952 0.67 0.423335
Target:  5'- cGGCGCcgcgGGGGGCGCgGaCGCcGGCGa--- -3'
miRNA:   3'- -CUGCG----CCCCCGCGaC-GCG-CCGCacua -5'
29422 5' -65.1 NC_006151.1 + 125539 0.66 0.475686
Target:  5'- uGCGUGGaGGUGC-GCgGCGGCGUGu- -3'
miRNA:   3'- cUGCGCCcCCGCGaCG-CGCCGCACua -5'
29422 5' -65.1 NC_006151.1 + 127805 0.71 0.228546
Target:  5'- cGCGCGGGGGCGCgagguccuUGCgguucacguacgugGCGGCGUc-- -3'
miRNA:   3'- cUGCGCCCCCGCG--------ACG--------------CGCCGCAcua -5'
29422 5' -65.1 NC_006151.1 + 129235 0.69 0.315075
Target:  5'- uGGCGCGGGuGCGCcccucggUGaCGCGGCGcGAg -3'
miRNA:   3'- -CUGCGCCCcCGCG-------AC-GCGCCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 130932 0.72 0.195193
Target:  5'- -cCGCGGGGGCGg-GgGCGGCGgggGGUc -3'
miRNA:   3'- cuGCGCCCCCGCgaCgCGCCGCa--CUA- -5'
29422 5' -65.1 NC_006151.1 + 131123 0.67 0.423335
Target:  5'- cGGCGCGGGaGGcCGCgGCGCcGCGg--- -3'
miRNA:   3'- -CUGCGCCC-CC-GCGaCGCGcCGCacua -5'
29422 5' -65.1 NC_006151.1 + 134004 0.71 0.219138
Target:  5'- aGCGCGGGGGCcaccagcGCgcagaGCGCGGCGa--- -3'
miRNA:   3'- cUGCGCCCCCG-------CGa----CGCGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 135013 0.68 0.351687
Target:  5'- gGGCGCGGGGGgGCaGCaGCGGgGc--- -3'
miRNA:   3'- -CUGCGCCCCCgCGaCG-CGCCgCacua -5'
29422 5' -65.1 NC_006151.1 + 135121 0.69 0.315764
Target:  5'- cGCGCGGGGcGgGCUGgGCGGgGa--- -3'
miRNA:   3'- cUGCGCCCC-CgCGACgCGCCgCacua -5'
29422 5' -65.1 NC_006151.1 + 136993 0.66 0.475686
Target:  5'- --gGCGGcGGGCGCgcGCGCacGGCGcUGGg -3'
miRNA:   3'- cugCGCC-CCCGCGa-CGCG--CCGC-ACUa -5'
29422 5' -65.1 NC_006151.1 + 137115 0.79 0.058834
Target:  5'- gGACGCcuGGGGGCGCgcgacgGCGCGGCGcGAc -3'
miRNA:   3'- -CUGCG--CCCCCGCGa-----CGCGCCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 139646 0.71 0.230147
Target:  5'- cGGCGCGGGGGuCGCgGCG-GGCGc--- -3'
miRNA:   3'- -CUGCGCCCCC-GCGaCGCgCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 141749 0.68 0.336978
Target:  5'- gGGCGCGGGGcGCGC-GCcccgGUGGCGUc-- -3'
miRNA:   3'- -CUGCGCCCC-CGCGaCG----CGCCGCAcua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.