Results 41 - 60 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29422 | 5' | -65.1 | NC_006151.1 | + | 95303 | 0.68 | 0.35921 |
Target: 5'- cGCGCGGcccGGCGCaGCGCGGCa---- -3' miRNA: 3'- cUGCGCCc--CCGCGaCGCGCCGcacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 90832 | 0.67 | 0.423335 |
Target: 5'- cACGCugaacaGGGGCGcCUGcCGCGGCGUc-- -3' miRNA: 3'- cUGCGc-----CCCCGC-GAC-GCGCCGCAcua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 89506 | 0.67 | 0.382448 |
Target: 5'- cGCGCGGGuguGGCGCa--GCGGaCGUGGUc -3' miRNA: 3'- cUGCGCCC---CCGCGacgCGCC-GCACUA- -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 89102 | 0.67 | 0.414949 |
Target: 5'- -cCGCGGGGGCuucCUGCGCgagaccgagGGCGgcggGAc -3' miRNA: 3'- cuGCGCCCCCGc--GACGCG---------CCGCa---CUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 88301 | 0.67 | 0.385621 |
Target: 5'- aGACGUGGGGGCGCagggccucggagaaGCGCuGCGa--- -3' miRNA: 3'- -CUGCGCCCCCGCGa-------------CGCGcCGCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 88020 | 0.7 | 0.258239 |
Target: 5'- gGACGCGGGGGagGCgucguaGCGCuGCGUGu- -3' miRNA: 3'- -CUGCGCCCCCg-CGa-----CGCGcCGCACua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 87879 | 0.68 | 0.366845 |
Target: 5'- cGACGUGGGGGgggaaCGC-GCGgGGCGUc-- -3' miRNA: 3'- -CUGCGCCCCC-----GCGaCGCgCCGCAcua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 82425 | 0.66 | 0.475686 |
Target: 5'- aGAgGCGcGGGCGCUcGCGCgGGCGcUGc- -3' miRNA: 3'- -CUgCGCcCCCGCGA-CGCG-CCGC-ACua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 82175 | 0.68 | 0.366845 |
Target: 5'- aGCGcCGGGGGCGCgaucaUGCGCauccgcucGGCG-GAg -3' miRNA: 3'- cUGC-GCCCCCGCG-----ACGCG--------CCGCaCUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 78046 | 0.7 | 0.246112 |
Target: 5'- cGACGCGGcgcaucuGGGCGaC-GCGCGGCGgGAg -3' miRNA: 3'- -CUGCGCC-------CCCGC-GaCGCGCCGCaCUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 76657 | 0.66 | 0.440408 |
Target: 5'- cGCGUGcGGGCGCgugUGCGCGGuCGcUGGg -3' miRNA: 3'- cUGCGCcCCCGCG---ACGCGCC-GC-ACUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 75392 | 0.71 | 0.216584 |
Target: 5'- cGGCGCGGGgcgGGUGCgUGCGCggguccgggaggcccGGCGUGGg -3' miRNA: 3'- -CUGCGCCC---CCGCG-ACGCG---------------CCGCACUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 74513 | 0.72 | 0.190596 |
Target: 5'- --aGCGGGGGCaGCaGCGUGGCGUc-- -3' miRNA: 3'- cugCGCCCCCG-CGaCGCGCCGCAcua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 73383 | 0.67 | 0.406665 |
Target: 5'- ---aCGGGGGCGCgcaGCGCGGCc---- -3' miRNA: 3'- cugcGCCCCCGCGa--CGCGCCGcacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 73045 | 0.7 | 0.282681 |
Target: 5'- uGGCGCgguGGGGGUGCgcgggguccGCGUGGCuGUGGUc -3' miRNA: 3'- -CUGCG---CCCCCGCGa--------CGCGCCG-CACUA- -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 70092 | 0.66 | 0.449089 |
Target: 5'- cGCGUGGGcGGCGaaggGCGCGaGCG-GGUc -3' miRNA: 3'- cUGCGCCC-CCGCga--CGCGC-CGCaCUA- -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 69973 | 0.72 | 0.186095 |
Target: 5'- -cCGCGcGGGCGCUGCaGCGGCGg--- -3' miRNA: 3'- cuGCGCcCCCGCGACG-CGCCGCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 68768 | 0.69 | 0.322722 |
Target: 5'- --gGCGGuGGCGC-GCGCGGCGaGGUg -3' miRNA: 3'- cugCGCCcCCGCGaCGCGCCGCaCUA- -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 66930 | 0.69 | 0.308921 |
Target: 5'- gGAgGCGGGGGCGaggGCaaagGCGGCGgcgGGc -3' miRNA: 3'- -CUgCGCCCCCGCga-CG----CGCCGCa--CUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 66537 | 0.7 | 0.252404 |
Target: 5'- cGCGCucuucGGGGGCGC-GCGCGGCcgcgccgccGUGGa -3' miRNA: 3'- cUGCG-----CCCCCGCGaCGCGCCG---------CACUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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