Results 81 - 99 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29422 | 5' | -65.1 | NC_006151.1 | + | 20485 | 0.74 | 0.144599 |
Target: 5'- gGGCGCGGGGGUcgucggcggcucugGCUcgaucggGgGCGGCGUGGUg -3' miRNA: 3'- -CUGCGCCCCCG--------------CGA-------CgCGCCGCACUA- -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 19967 | 0.68 | 0.362251 |
Target: 5'- -uCGCGGGGGUGCccagguuuaaaacgGCGCGGaCG-GAg -3' miRNA: 3'- cuGCGCCCCCGCGa-------------CGCGCC-GCaCUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 19123 | 0.74 | 0.133637 |
Target: 5'- -cCGCGGGGGCGC-GCGCGcguaguaccaguccaGCGUGGc -3' miRNA: 3'- cuGCGCCCCCGCGaCGCGC---------------CGCACUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 19058 | 0.68 | 0.366845 |
Target: 5'- gGGCGCaGGcacucGGGCGC-GCGCGG-GUGGUa -3' miRNA: 3'- -CUGCG-CC-----CCCGCGaCGCGCCgCACUA- -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 18696 | 0.68 | 0.35921 |
Target: 5'- cGCGCGGGcGGCGCcgGCGU--CGUGAc -3' miRNA: 3'- cUGCGCCC-CCGCGa-CGCGccGCACUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 17395 | 0.66 | 0.475686 |
Target: 5'- cACGaCGGGGcGCGUggcGCGCGGCa---- -3' miRNA: 3'- cUGC-GCCCC-CGCGa--CGCGCCGcacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 17109 | 0.67 | 0.423335 |
Target: 5'- gGGCGcCGGGGGCuccggcggcgguGCUGCGggaGGCGgccagGAg -3' miRNA: 3'- -CUGC-GCCCCCG------------CGACGCg--CCGCa----CUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 15052 | 0.67 | 0.390413 |
Target: 5'- cGCGCGGGgccccGGCGCcuucUGCGCGGCc---- -3' miRNA: 3'- cUGCGCCC-----CCGCG----ACGCGCCGcacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 11790 | 0.67 | 0.398486 |
Target: 5'- gGGCGCGuGGGCGagagGgGCGGgGUGGg -3' miRNA: 3'- -CUGCGCcCCCGCga--CgCGCCgCACUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 11698 | 0.7 | 0.276403 |
Target: 5'- -cCGCGGGacGGCGC-GUGCGGCGcgGAa -3' miRNA: 3'- cuGCGCCC--CCGCGaCGCGCCGCa-CUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 10202 | 0.69 | 0.289071 |
Target: 5'- cGGCGCGGGcGGCgGCUGCagagGCGGCugcgGAc -3' miRNA: 3'- -CUGCGCCC-CCG-CGACG----CGCCGca--CUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 8078 | 0.69 | 0.295574 |
Target: 5'- --gGCGacGGGGCGUgGCGgGGCGUGGc -3' miRNA: 3'- cugCGC--CCCCGCGaCGCgCCGCACUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 5343 | 0.68 | 0.374592 |
Target: 5'- --gGCGGaGGGCGCccucuccgGCGCGGCGc--- -3' miRNA: 3'- cugCGCC-CCCGCGa-------CGCGCCGCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 5083 | 0.66 | 0.466732 |
Target: 5'- -cCGCGGGGcCGCggcggGCGCcGGCG-GAg -3' miRNA: 3'- cuGCGCCCCcGCGa----CGCG-CCGCaCUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 4393 | 0.76 | 0.103098 |
Target: 5'- cGGCGCGGGGGUccGCgGCGCGGCccgGGUa -3' miRNA: 3'- -CUGCGCCCCCG--CGaCGCGCCGca-CUA- -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 4314 | 0.71 | 0.241061 |
Target: 5'- -uCGCGGGGcacgcggccGgGCUGCGCGGCGgcGAa -3' miRNA: 3'- cuGCGCCCC---------CgCGACGCGCCGCa-CUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 3245 | 0.69 | 0.302191 |
Target: 5'- cGGCGCGgcggcggagcGGGGCGCcgcggcGCGCGGCGa--- -3' miRNA: 3'- -CUGCGC----------CCCCGCGa-----CGCGCCGCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 3118 | 0.66 | 0.475686 |
Target: 5'- cGGCGCGGGucccaggccgGGCGCgggGCGCccucGGCGg--- -3' miRNA: 3'- -CUGCGCCC----------CCGCGa--CGCG----CCGCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 734 | 0.66 | 0.475686 |
Target: 5'- --gGCGGGGGCuuccGCUcCGCGGCGc--- -3' miRNA: 3'- cugCGCCCCCG----CGAcGCGCCGCacua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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