Results 41 - 60 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29422 | 5' | -65.1 | NC_006151.1 | + | 118157 | 0.66 | 0.475686 |
Target: 5'- --gGCGGuGGCGCcgcuggUGCGCGGCcUGAc -3' miRNA: 3'- cugCGCCcCCGCG------ACGCGCCGcACUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 125539 | 0.66 | 0.475686 |
Target: 5'- uGCGUGGaGGUGC-GCgGCGGCGUGu- -3' miRNA: 3'- cUGCGCCcCCGCGaCG-CGCCGCACua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 17395 | 0.66 | 0.475686 |
Target: 5'- cACGaCGGGGcGCGUggcGCGCGGCa---- -3' miRNA: 3'- cUGC-GCCCC-CGCGa--CGCGCCGcacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 136993 | 0.66 | 0.475686 |
Target: 5'- --gGCGGcGGGCGCgcGCGCacGGCGcUGGg -3' miRNA: 3'- cugCGCC-CCCGCGa-CGCG--CCGC-ACUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 50462 | 0.66 | 0.484725 |
Target: 5'- -cCGCGGGcgcucGCGCcaGCGCGGCGcGAc -3' miRNA: 3'- cuGCGCCCc----CGCGa-CGCGCCGCaCUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 62094 | 0.66 | 0.457865 |
Target: 5'- cGGCGCGGucGGC-CUggGCGCGGcCGUGGUc -3' miRNA: 3'- -CUGCGCCc-CCGcGA--CGCGCC-GCACUA- -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 21313 | 0.66 | 0.457865 |
Target: 5'- --aGCGGuGGCGCgagacgcccgGCGCGGCGggGGUc -3' miRNA: 3'- cugCGCCcCCGCGa---------CGCGCCGCa-CUA- -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 89102 | 0.67 | 0.414949 |
Target: 5'- -cCGCGGGGGCuucCUGCGCgagaccgagGGCGgcggGAc -3' miRNA: 3'- cuGCGCCCCCGc--GACGCG---------CCGCa---CUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 17109 | 0.67 | 0.423335 |
Target: 5'- gGGCGcCGGGGGCuccggcggcgguGCUGCGggaGGCGgccagGAg -3' miRNA: 3'- -CUGC-GCCCCCG------------CGACGCg--CCGCa----CUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 131123 | 0.67 | 0.423335 |
Target: 5'- cGGCGCGGGaGGcCGCgGCGCcGCGg--- -3' miRNA: 3'- -CUGCGCCC-CC-GCGaCGCGcCGCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 54412 | 0.67 | 0.423335 |
Target: 5'- cGGCGCcGaGGCGCUgGCGCGGCGc--- -3' miRNA: 3'- -CUGCGcCcCCGCGA-CGCGCCGCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 122952 | 0.67 | 0.423335 |
Target: 5'- cGGCGCcgcgGGGGGCGCgGaCGCcGGCGa--- -3' miRNA: 3'- -CUGCG----CCCCCGCGaC-GCG-CCGCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 90832 | 0.67 | 0.423335 |
Target: 5'- cACGCugaacaGGGGCGcCUGcCGCGGCGUc-- -3' miRNA: 3'- cUGCGc-----CCCCGC-GAC-GCGCCGCAcua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 76657 | 0.66 | 0.440408 |
Target: 5'- cGCGUGcGGGCGCgugUGCGCGGuCGcUGGg -3' miRNA: 3'- cUGCGCcCCCGCG---ACGCGCC-GC-ACUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 118433 | 0.66 | 0.440408 |
Target: 5'- gGGCGCGGaGGuGUGC-GCGCGGCu---- -3' miRNA: 3'- -CUGCGCC-CC-CGCGaCGCGCCGcacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 97350 | 0.66 | 0.449089 |
Target: 5'- uACGCGGGGaaggccgcggcgGCgGCggGCGCGGCGgGGg -3' miRNA: 3'- cUGCGCCCC------------CG-CGa-CGCGCCGCaCUa -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 70092 | 0.66 | 0.449089 |
Target: 5'- cGCGUGGGcGGCGaaggGCGCGaGCG-GGUc -3' miRNA: 3'- cUGCGCCC-CCGCga--CGCGC-CGCaCUA- -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 105031 | 0.66 | 0.449089 |
Target: 5'- uGACGCaGGcGGCGCUGCugcuCGGCGc--- -3' miRNA: 3'- -CUGCGcCC-CCGCGACGc---GCCGCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 122392 | 0.66 | 0.449089 |
Target: 5'- -cCGCGGGcGcGCGCUG-GCGGCGc--- -3' miRNA: 3'- cuGCGCCC-C-CGCGACgCGCCGCacua -5' |
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29422 | 5' | -65.1 | NC_006151.1 | + | 33076 | 0.66 | 0.457865 |
Target: 5'- aGACGgaGGGGGCGaggGCG-GGCGgugGAg -3' miRNA: 3'- -CUGCg-CCCCCGCga-CGCgCCGCa--CUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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