miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29422 5' -65.1 NC_006151.1 + 122392 0.66 0.449089
Target:  5'- -cCGCGGGcGcGCGCUG-GCGGCGc--- -3'
miRNA:   3'- cuGCGCCC-C-CGCGACgCGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 118433 0.66 0.440408
Target:  5'- gGGCGCGGaGGuGUGC-GCGCGGCu---- -3'
miRNA:   3'- -CUGCGCC-CC-CGCGaCGCGCCGcacua -5'
29422 5' -65.1 NC_006151.1 + 76657 0.66 0.440408
Target:  5'- cGCGUGcGGGCGCgugUGCGCGGuCGcUGGg -3'
miRNA:   3'- cUGCGCcCCCGCG---ACGCGCC-GC-ACUa -5'
29422 5' -65.1 NC_006151.1 + 17109 0.67 0.423335
Target:  5'- gGGCGcCGGGGGCuccggcggcgguGCUGCGggaGGCGgccagGAg -3'
miRNA:   3'- -CUGC-GCCCCCG------------CGACGCg--CCGCa----CUa -5'
29422 5' -65.1 NC_006151.1 + 131123 0.67 0.423335
Target:  5'- cGGCGCGGGaGGcCGCgGCGCcGCGg--- -3'
miRNA:   3'- -CUGCGCCC-CC-GCGaCGCGcCGCacua -5'
29422 5' -65.1 NC_006151.1 + 54412 0.67 0.423335
Target:  5'- cGGCGCcGaGGCGCUgGCGCGGCGc--- -3'
miRNA:   3'- -CUGCGcCcCCGCGA-CGCGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 122952 0.67 0.423335
Target:  5'- cGGCGCcgcgGGGGGCGCgGaCGCcGGCGa--- -3'
miRNA:   3'- -CUGCG----CCCCCGCGaC-GCG-CCGCacua -5'
29422 5' -65.1 NC_006151.1 + 90832 0.67 0.423335
Target:  5'- cACGCugaacaGGGGCGcCUGcCGCGGCGUc-- -3'
miRNA:   3'- cUGCGc-----CCCCGC-GAC-GCGCCGCAcua -5'
29422 5' -65.1 NC_006151.1 + 89102 0.67 0.414949
Target:  5'- -cCGCGGGGGCuucCUGCGCgagaccgagGGCGgcggGAc -3'
miRNA:   3'- cuGCGCCCCCGc--GACGCG---------CCGCa---CUa -5'
29422 5' -65.1 NC_006151.1 + 54642 0.67 0.406665
Target:  5'- --aGCGGcGGCGCgaGCGCuGCGUGGa -3'
miRNA:   3'- cugCGCCcCCGCGa-CGCGcCGCACUa -5'
29422 5' -65.1 NC_006151.1 + 73383 0.67 0.406665
Target:  5'- ---aCGGGGGCGCgcaGCGCGGCc---- -3'
miRNA:   3'- cugcGCCCCCGCGa--CGCGCCGcacua -5'
29422 5' -65.1 NC_006151.1 + 111443 0.67 0.398486
Target:  5'- cGGCGCGGuccaggaGGCGCUGCGUcugcgaGGCGUc-- -3'
miRNA:   3'- -CUGCGCCc------CCGCGACGCG------CCGCAcua -5'
29422 5' -65.1 NC_006151.1 + 11790 0.67 0.398486
Target:  5'- gGGCGCGuGGGCGagagGgGCGGgGUGGg -3'
miRNA:   3'- -CUGCGCcCCCGCga--CgCGCCgCACUa -5'
29422 5' -65.1 NC_006151.1 + 103788 0.67 0.396053
Target:  5'- aGCGCuGGcGGCGCUGCaggccgcgcugucgGCGGcCGUGGc -3'
miRNA:   3'- cUGCGcCC-CCGCGACG--------------CGCC-GCACUa -5'
29422 5' -65.1 NC_006151.1 + 64863 0.67 0.390413
Target:  5'- --gGCGGaGGGcCGCUGCcCGGCGgGAg -3'
miRNA:   3'- cugCGCC-CCC-GCGACGcGCCGCaCUa -5'
29422 5' -65.1 NC_006151.1 + 15052 0.67 0.390413
Target:  5'- cGCGCGGGgccccGGCGCcuucUGCGCGGCc---- -3'
miRNA:   3'- cUGCGCCC-----CCGCG----ACGCGCCGcacua -5'
29422 5' -65.1 NC_006151.1 + 39338 0.67 0.390413
Target:  5'- -uCGCGGcucGGCGCgGCGCGGCGc--- -3'
miRNA:   3'- cuGCGCCc--CCGCGaCGCGCCGCacua -5'
29422 5' -65.1 NC_006151.1 + 88301 0.67 0.385621
Target:  5'- aGACGUGGGGGCGCagggccucggagaaGCGCuGCGa--- -3'
miRNA:   3'- -CUGCGCCCCCGCGa-------------CGCGcCGCacua -5'
29422 5' -65.1 NC_006151.1 + 117191 0.67 0.38324
Target:  5'- -cCGCcgGGGGGCGUcguaguaguagacggGCGCGGCGUcGAc -3'
miRNA:   3'- cuGCG--CCCCCGCGa--------------CGCGCCGCA-CUa -5'
29422 5' -65.1 NC_006151.1 + 89506 0.67 0.382448
Target:  5'- cGCGCGGGuguGGCGCa--GCGGaCGUGGUc -3'
miRNA:   3'- cUGCGCCC---CCGCGacgCGCC-GCACUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.