miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29423 3' -56.5 NC_006151.1 + 4364 0.66 0.880063
Target:  5'- gGCGCagag-GgCCUCgACGGUCGCCu -3'
miRNA:   3'- gCGCGagaaaCgGGAG-UGCUAGCGGc -5'
29423 3' -56.5 NC_006151.1 + 105534 0.66 0.880063
Target:  5'- gCGCGCaUCgg-GCCCgagcugcggCACGA-CGCCc -3'
miRNA:   3'- -GCGCG-AGaaaCGGGa--------GUGCUaGCGGc -5'
29423 3' -56.5 NC_006151.1 + 122541 0.66 0.880063
Target:  5'- aCGUGUUCcg-GCCCgccUCGCGG-CGCCu -3'
miRNA:   3'- -GCGCGAGaaaCGGG---AGUGCUaGCGGc -5'
29423 3' -56.5 NC_006151.1 + 133451 0.66 0.880063
Target:  5'- gGCGCUCUUgGCCCcggucgaggccCGCGAggcgGCCGc -3'
miRNA:   3'- gCGCGAGAAaCGGGa----------GUGCUag--CGGC- -5'
29423 3' -56.5 NC_006151.1 + 128132 0.66 0.872904
Target:  5'- aGCGCUCcguggGCCCgccgUACGAg-GCCa -3'
miRNA:   3'- gCGCGAGaaa--CGGGa---GUGCUagCGGc -5'
29423 3' -56.5 NC_006151.1 + 11905 0.66 0.865531
Target:  5'- gCGCGUcgggguuuUCgc-GCCCUCGCGc-CGCCGc -3'
miRNA:   3'- -GCGCG--------AGaaaCGGGAGUGCuaGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 66537 0.66 0.865531
Target:  5'- nGCGCUCUUcggggGCgCgCGCGGccgCGCCGc -3'
miRNA:   3'- gCGCGAGAAa----CGgGaGUGCUa--GCGGC- -5'
29423 3' -56.5 NC_006151.1 + 95852 0.66 0.865531
Target:  5'- gGCGCUCgcUGUCgCUguUGAUgGCCGc -3'
miRNA:   3'- gCGCGAGaaACGG-GAguGCUAgCGGC- -5'
29423 3' -56.5 NC_006151.1 + 118335 0.66 0.865531
Target:  5'- aGCGCcgCgcccGCCCUCuCGcgCGCCu -3'
miRNA:   3'- gCGCGa-Gaaa-CGGGAGuGCuaGCGGc -5'
29423 3' -56.5 NC_006151.1 + 68626 0.66 0.865531
Target:  5'- aCGCGaac--UGCCCgCGCG-UCGCCGg -3'
miRNA:   3'- -GCGCgagaaACGGGaGUGCuAGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 68882 0.66 0.863278
Target:  5'- gCGCGCcCg--GCcacgucgaggacggCCUCGCGGUCGCgCGg -3'
miRNA:   3'- -GCGCGaGaaaCG--------------GGAGUGCUAGCG-GC- -5'
29423 3' -56.5 NC_006151.1 + 111362 0.67 0.857949
Target:  5'- gCGCGCggggCgaggGcCCCUCGCcgucGUCGCCGc -3'
miRNA:   3'- -GCGCGa---Gaaa-C-GGGAGUGc---UAGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 99630 0.67 0.857949
Target:  5'- cCGCGCgCgagGCCCUCaacACGuggcUCGCCu -3'
miRNA:   3'- -GCGCGaGaaaCGGGAG---UGCu---AGCGGc -5'
29423 3' -56.5 NC_006151.1 + 103607 0.67 0.857949
Target:  5'- aCGCGCuUCU---UCCUCGCGcaCGCCGa -3'
miRNA:   3'- -GCGCG-AGAaacGGGAGUGCuaGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 88783 0.67 0.85718
Target:  5'- gCGCGCUC---GCCCUCgacgacgacgggcGCGAgcgCGuCCGg -3'
miRNA:   3'- -GCGCGAGaaaCGGGAG-------------UGCUa--GC-GGC- -5'
29423 3' -56.5 NC_006151.1 + 138160 0.67 0.850165
Target:  5'- gCGCGCUCgagGCCUUCgugGCGGacgUgGCCa -3'
miRNA:   3'- -GCGCGAGaaaCGGGAG---UGCU---AgCGGc -5'
29423 3' -56.5 NC_006151.1 + 50013 0.67 0.850165
Target:  5'- cCGCGCgcgCg--GCCCgCGCGG-CGCCc -3'
miRNA:   3'- -GCGCGa--GaaaCGGGaGUGCUaGCGGc -5'
29423 3' -56.5 NC_006151.1 + 136808 0.67 0.842184
Target:  5'- cCGCGCUCgcgGCCgaCGCGccgCGCgGg -3'
miRNA:   3'- -GCGCGAGaaaCGGgaGUGCua-GCGgC- -5'
29423 3' -56.5 NC_006151.1 + 141861 0.67 0.842184
Target:  5'- uCGCGC-Cgc-GCCCUCugG--UGCCGg -3'
miRNA:   3'- -GCGCGaGaaaCGGGAGugCuaGCGGC- -5'
29423 3' -56.5 NC_006151.1 + 127243 0.67 0.834014
Target:  5'- gCGCcaGCUCUUgcgGCgCgacgCGCGGUgGCCGg -3'
miRNA:   3'- -GCG--CGAGAAa--CGgGa---GUGCUAgCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.