miRNA display CGI


Results 21 - 40 of 229 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29423 5' -58.9 NC_006151.1 + 58843 0.66 0.777451
Target:  5'- --gCAgGugCGCCAGcgcguggagcucGCCCGGCGCg -3'
miRNA:   3'- aagGUgCugGCGGUCu-----------UGGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 117242 0.66 0.770047
Target:  5'- gUCCACG-UCGgCGG-GCCCGAgGCg -3'
miRNA:   3'- aAGGUGCuGGCgGUCuUGGGCUgCGa -5'
29423 5' -58.9 NC_006151.1 + 56565 0.66 0.770047
Target:  5'- -gCCggGCGACgCGCCGccGCCCGACGg- -3'
miRNA:   3'- aaGG--UGCUG-GCGGUcuUGGGCUGCga -5'
29423 5' -58.9 NC_006151.1 + 86730 0.66 0.770047
Target:  5'- --gCGCG-CCGCCGcGAGgCCGGCGUg -3'
miRNA:   3'- aagGUGCuGGCGGU-CUUgGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 105682 0.66 0.770047
Target:  5'- -cCUACGGCgGCgCGGGGCcgacgCCGGCGCg -3'
miRNA:   3'- aaGGUGCUGgCG-GUCUUG-----GGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 6142 0.66 0.770047
Target:  5'- -gCCGCGGCCGCgAGGacggcggccucgGCCuCGGCGg- -3'
miRNA:   3'- aaGGUGCUGGCGgUCU------------UGG-GCUGCga -5'
29423 5' -58.9 NC_006151.1 + 50852 0.66 0.770047
Target:  5'- cUCgGCGGCCGCCcu--CCCG-CGCc -3'
miRNA:   3'- aAGgUGCUGGCGGucuuGGGCuGCGa -5'
29423 5' -58.9 NC_006151.1 + 78747 0.66 0.770047
Target:  5'- -cCCACGuCCGCCGucuGCgCCGAgGCg -3'
miRNA:   3'- aaGGUGCuGGCGGUcu-UG-GGCUgCGa -5'
29423 5' -58.9 NC_006151.1 + 81491 0.66 0.770047
Target:  5'- gUUCCACGcgGCCGUCGGcgagagcgcGGCCCG-CGUg -3'
miRNA:   3'- -AAGGUGC--UGGCGGUC---------UUGGGCuGCGa -5'
29423 5' -58.9 NC_006151.1 + 84785 0.66 0.770047
Target:  5'- --gCGCGcGCCGCCgaGGAggcGCCCGAgGCg -3'
miRNA:   3'- aagGUGC-UGGCGG--UCU---UGGGCUgCGa -5'
29423 5' -58.9 NC_006151.1 + 98692 0.66 0.770047
Target:  5'- -cCCGCGucguGCCcCCGGAGCagaCGGCGCg -3'
miRNA:   3'- aaGGUGC----UGGcGGUCUUGg--GCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 139760 0.66 0.770047
Target:  5'- gUCCG-GACgGC--GGGCCCGACGCg -3'
miRNA:   3'- aAGGUgCUGgCGguCUUGGGCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 102267 0.66 0.770047
Target:  5'- aUCCugGgcgcGCUGCCGGAgcgcgGCCCGGC-Cg -3'
miRNA:   3'- aAGGugC----UGGCGGUCU-----UGGGCUGcGa -5'
29423 5' -58.9 NC_006151.1 + 127397 0.66 0.769116
Target:  5'- -gCCGCGGCCGagucgaCgGGAGCCCGcggggucgccucgGCGCUc -3'
miRNA:   3'- aaGGUGCUGGC------GgUCUUGGGC-------------UGCGA- -5'
29423 5' -58.9 NC_006151.1 + 114436 0.66 0.760685
Target:  5'- gUgCugGACCGCCugcucGGGGCCUG-CGCc -3'
miRNA:   3'- aAgGugCUGGCGG-----UCUUGGGCuGCGa -5'
29423 5' -58.9 NC_006151.1 + 64925 0.66 0.760685
Target:  5'- cUCCACGGCguacucgcgCGUCAGcGCCUGgccGCGCUg -3'
miRNA:   3'- aAGGUGCUG---------GCGGUCuUGGGC---UGCGA- -5'
29423 5' -58.9 NC_006151.1 + 77296 0.66 0.760685
Target:  5'- -gCCGCG-CCGCguGuGCCCGcCGCc -3'
miRNA:   3'- aaGGUGCuGGCGguCuUGGGCuGCGa -5'
29423 5' -58.9 NC_006151.1 + 96555 0.66 0.760685
Target:  5'- gUCCACGGCgCGCguGAuaaacagcgccGCCucgCGGCGCg -3'
miRNA:   3'- aAGGUGCUG-GCGguCU-----------UGG---GCUGCGa -5'
29423 5' -58.9 NC_006151.1 + 122069 0.66 0.760685
Target:  5'- cUCCACGA-CGCCgAGAACCUGcucaaGCa -3'
miRNA:   3'- aAGGUGCUgGCGG-UCUUGGGCug---CGa -5'
29423 5' -58.9 NC_006151.1 + 113892 0.66 0.760685
Target:  5'- gUCguCGGCCGCgCGGcGCaaGACGCUg -3'
miRNA:   3'- aAGguGCUGGCG-GUCuUGggCUGCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.