miRNA display CGI


Results 21 - 40 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29424 3' -65.8 NC_006151.1 + 25331 0.66 0.471799
Target:  5'- aGCgCCgGGA-CGGcCGGCGUGcCGCGa -3'
miRNA:   3'- aCGgGGgCCUcGUCuGCCGCGC-GCGC- -5'
29424 3' -65.8 NC_006151.1 + 68309 0.66 0.471799
Target:  5'- cGCCCacgaCGGcGaGGGCGGCGUagaccuugacGCGCGa -3'
miRNA:   3'- aCGGGg---GCCuCgUCUGCCGCG----------CGCGC- -5'
29424 3' -65.8 NC_006151.1 + 84248 0.66 0.471799
Target:  5'- gGCCCagCGGAGCAu---GCGCGUGCu -3'
miRNA:   3'- aCGGGg-GCCUCGUcugcCGCGCGCGc -5'
29424 3' -65.8 NC_006151.1 + 121359 0.66 0.471799
Target:  5'- gGCCagaCGGGcGCGGACGGCG-GCGa- -3'
miRNA:   3'- aCGGgg-GCCU-CGUCUGCCGCgCGCgc -5'
29424 3' -65.8 NC_006151.1 + 5331 0.66 0.471799
Target:  5'- aGCCgcggCCGcGGCGGAgGGCGCccucuccgGCGCGg -3'
miRNA:   3'- aCGGg---GGCcUCGUCUgCCGCG--------CGCGC- -5'
29424 3' -65.8 NC_006151.1 + 19396 0.66 0.471799
Target:  5'- gGCCCgCCGGA-CGGucaGGUGCG-GCGa -3'
miRNA:   3'- aCGGG-GGCCUcGUCug-CCGCGCgCGC- -5'
29424 3' -65.8 NC_006151.1 + 28877 0.66 0.471799
Target:  5'- cGUCCCCGGAG---GCgGGUGC-CGCGg -3'
miRNA:   3'- aCGGGGGCCUCgucUG-CCGCGcGCGC- -5'
29424 3' -65.8 NC_006151.1 + 60632 0.66 0.471799
Target:  5'- cGUCgUCGGGGCGGGgcuccCGGCcCGCGCc -3'
miRNA:   3'- aCGGgGGCCUCGUCU-----GCCGcGCGCGc -5'
29424 3' -65.8 NC_006151.1 + 67912 0.66 0.471799
Target:  5'- aGCCUCgGGuccaucuGCAGgaaguagacGCGGcCGCGCGCc -3'
miRNA:   3'- aCGGGGgCCu------CGUC---------UGCC-GCGCGCGc -5'
29424 3' -65.8 NC_006151.1 + 134749 0.66 0.471799
Target:  5'- cGCCCC--GAGCAG-C-GCGCGCGgGg -3'
miRNA:   3'- aCGGGGgcCUCGUCuGcCGCGCGCgC- -5'
29424 3' -65.8 NC_006151.1 + 33890 0.66 0.471799
Target:  5'- -cCCCCCgGGGGCGGG-GGCcuCGCGCc -3'
miRNA:   3'- acGGGGG-CCUCGUCUgCCGc-GCGCGc -5'
29424 3' -65.8 NC_006151.1 + 99711 0.66 0.471799
Target:  5'- cGCCCauGGAgGCGccGACGaGCGCgGCGCu -3'
miRNA:   3'- aCGGGggCCU-CGU--CUGC-CGCG-CGCGc -5'
29424 3' -65.8 NC_006151.1 + 79766 0.66 0.470917
Target:  5'- gGUCCCCGGuccacGGCGGccggaucGCGGCcucgGCGCGg -3'
miRNA:   3'- aCGGGGGCC-----UCGUC-------UGCCGcg--CGCGC- -5'
29424 3' -65.8 NC_006151.1 + 94669 0.66 0.470917
Target:  5'- gGUgCCCGGcgGGCAGcuccccgaaggccGCGGCcacggaccacuGCGCGCGc -3'
miRNA:   3'- aCGgGGGCC--UCGUC-------------UGCCG-----------CGCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 60092 0.66 0.470917
Target:  5'- cGCCgCCGcgaacgccGGGCGGcaGCGGCGCuggaacuGCGCGc -3'
miRNA:   3'- aCGGgGGC--------CUCGUC--UGCCGCG-------CGCGC- -5'
29424 3' -65.8 NC_006151.1 + 45514 0.66 0.470036
Target:  5'- aGCCCCaGGAGCcgucgacccaccgcgGGAgGGCccgcuucccacgacgGCGCGCc -3'
miRNA:   3'- aCGGGGgCCUCG---------------UCUgCCG---------------CGCGCGc -5'
29424 3' -65.8 NC_006151.1 + 69712 0.66 0.469156
Target:  5'- cGCCgCCgGGGGCAG-CaGCGCGUcgauguggccccccGCGg -3'
miRNA:   3'- aCGG-GGgCCUCGUCuGcCGCGCG--------------CGC- -5'
29424 3' -65.8 NC_006151.1 + 27165 0.66 0.469156
Target:  5'- gGCCCCgaggcgccgcguguCGGGGCgccAGGgGGC-CGCGCa -3'
miRNA:   3'- aCGGGG--------------GCCUCG---UCUgCCGcGCGCGc -5'
29424 3' -65.8 NC_006151.1 + 42293 0.66 0.463892
Target:  5'- cGCCCCgGGGGuCGGAuCGGauuauuuuccucccCGCGCGa -3'
miRNA:   3'- aCGGGGgCCUC-GUCU-GCCgc------------GCGCGC- -5'
29424 3' -65.8 NC_006151.1 + 105563 0.66 0.463018
Target:  5'- cGCCCUgCGcGcGCuGGCGGCcgccuucgacgcGCGCGCGg -3'
miRNA:   3'- aCGGGG-GC-CuCGuCUGCCG------------CGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.