miRNA display CGI


Results 21 - 40 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29424 5' -54 NC_006151.1 + 118114 0.67 0.943304
Target:  5'- aCCUGCUggcgcugcUCGUGGCGCgcagCgccgACGACGc- -3'
miRNA:   3'- -GGGCGA--------AGCGCUGCGa---Ga---UGCUGUac -5'
29424 5' -54 NC_006151.1 + 118343 0.67 0.943304
Target:  5'- gCCCGCccucUCGCG-CGC-CUGCGAgGc- -3'
miRNA:   3'- -GGGCGa---AGCGCuGCGaGAUGCUgUac -5'
29424 5' -54 NC_006151.1 + 53983 0.67 0.941928
Target:  5'- cUCCGCgggcgUCGCGgcgagcucccggacGCGCUCcACGAUcgGc -3'
miRNA:   3'- -GGGCGa----AGCGC--------------UGCGAGaUGCUGuaC- -5'
29424 5' -54 NC_006151.1 + 47936 0.67 0.941928
Target:  5'- uUCCGCUUCGCcACGCUCcAguugccccgcccccCGGCAc- -3'
miRNA:   3'- -GGGCGAAGCGcUGCGAGaU--------------GCUGUac -5'
29424 5' -54 NC_006151.1 + 27263 0.67 0.938633
Target:  5'- gCCCGUacUCGgGGUGCUCgACGACGUa -3'
miRNA:   3'- -GGGCGa-AGCgCUGCGAGaUGCUGUAc -5'
29424 5' -54 NC_006151.1 + 51227 0.67 0.938633
Target:  5'- gCCCGCgcaggcggCGCGAgCGCUCgGCG-CAg- -3'
miRNA:   3'- -GGGCGaa------GCGCU-GCGAGaUGCuGUac -5'
29424 5' -54 NC_006151.1 + 86710 0.67 0.938633
Target:  5'- aCCGCUgggagcuggUCGCGGCGCgccgccgCgaggcCGGCGUGc -3'
miRNA:   3'- gGGCGA---------AGCGCUGCGa------Gau---GCUGUAC- -5'
29424 5' -54 NC_006151.1 + 113778 0.67 0.938633
Target:  5'- gCCGCcuuccugCGCGACGCacacgcgcugCUGCGGCGc- -3'
miRNA:   3'- gGGCGaa-----GCGCUGCGa---------GAUGCUGUac -5'
29424 5' -54 NC_006151.1 + 119809 0.67 0.938633
Target:  5'- gCCgGCUUCcggcacgcgcuGCG-CGCUCUgcGCGACAc- -3'
miRNA:   3'- -GGgCGAAG-----------CGCuGCGAGA--UGCUGUac -5'
29424 5' -54 NC_006151.1 + 15285 0.67 0.938633
Target:  5'- cCCCGCUgCGCaGCGCgCUGCG-CGa- -3'
miRNA:   3'- -GGGCGAaGCGcUGCGaGAUGCuGUac -5'
29424 5' -54 NC_006151.1 + 99962 0.67 0.933721
Target:  5'- aCCGCaccaagcUCGCcGCGCUCgugGCGGCGcUGg -3'
miRNA:   3'- gGGCGa------AGCGcUGCGAGa--UGCUGU-AC- -5'
29424 5' -54 NC_006151.1 + 31744 0.67 0.928569
Target:  5'- gCCCGCgccgGgGACGCgcCUGCGGCGg- -3'
miRNA:   3'- -GGGCGaag-CgCUGCGa-GAUGCUGUac -5'
29424 5' -54 NC_006151.1 + 79784 0.67 0.928569
Target:  5'- gCCGgaUCGCGGC-CUCggcGCGGCAc- -3'
miRNA:   3'- gGGCgaAGCGCUGcGAGa--UGCUGUac -5'
29424 5' -54 NC_006151.1 + 105339 0.67 0.928569
Target:  5'- gCCCGCgcgCGCG-CGCUgcagACGGCGa- -3'
miRNA:   3'- -GGGCGaa-GCGCuGCGAga--UGCUGUac -5'
29424 5' -54 NC_006151.1 + 119238 0.67 0.923174
Target:  5'- aCCGCUUCuaccaggugGCGGCGCcCUACcuGGCcgGg -3'
miRNA:   3'- gGGCGAAG---------CGCUGCGaGAUG--CUGuaC- -5'
29424 5' -54 NC_006151.1 + 78079 0.67 0.923174
Target:  5'- gCCUGUcccUGCaGAUGCUCUGCGACcucGUGg -3'
miRNA:   3'- -GGGCGaa-GCG-CUGCGAGAUGCUG---UAC- -5'
29424 5' -54 NC_006151.1 + 57473 0.68 0.917538
Target:  5'- gCCGCgcCGCGGCGgcCUCgcagGCGACGc- -3'
miRNA:   3'- gGGCGaaGCGCUGC--GAGa---UGCUGUac -5'
29424 5' -54 NC_006151.1 + 123235 0.68 0.917538
Target:  5'- uUCCGCgcacggCGCG-CGUUCUGCGAgGc- -3'
miRNA:   3'- -GGGCGaa----GCGCuGCGAGAUGCUgUac -5'
29424 5' -54 NC_006151.1 + 71758 0.68 0.917538
Target:  5'- -gCGCcgCGCGugGUcCUGCGGCAg- -3'
miRNA:   3'- ggGCGaaGCGCugCGaGAUGCUGUac -5'
29424 5' -54 NC_006151.1 + 132426 0.68 0.905546
Target:  5'- gCCCuCgUCGCGGCGCgcCUGCG-CGUGc -3'
miRNA:   3'- -GGGcGaAGCGCUGCGa-GAUGCuGUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.