miRNA display CGI


Results 1 - 20 of 157 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29426 3' -54.2 NC_006151.1 + 5439 0.66 0.965237
Target:  5'- cGggGccgcGGGCGAcggucucgacGGCGACGGuGGUGg -3'
miRNA:   3'- cCuuCaa--CUCGCU----------CUGCUGCCuCCGC- -5'
29426 3' -54.2 NC_006151.1 + 104009 0.66 0.965237
Target:  5'- uGGAGGc---GCGccgcGCGGCGGAGGUGg -3'
miRNA:   3'- -CCUUCaacuCGCuc--UGCUGCCUCCGC- -5'
29426 3' -54.2 NC_006151.1 + 41311 0.66 0.965237
Target:  5'- gGGggGggGGGgGGGugG-UGGuGGUGu -3'
miRNA:   3'- -CCuuCaaCUCgCUCugCuGCCuCCGC- -5'
29426 3' -54.2 NC_006151.1 + 33023 0.66 0.965237
Target:  5'- uGGccGUUGGcCGAgGACGACGGGGaGgGg -3'
miRNA:   3'- -CCuuCAACUcGCU-CUGCUGCCUC-CgC- -5'
29426 3' -54.2 NC_006151.1 + 9502 0.66 0.96425
Target:  5'- uGGGAGagcgGGGCguguggggaaggaaGAGGgGACGGGGGgGa -3'
miRNA:   3'- -CCUUCaa--CUCG--------------CUCUgCUGCCUCCgC- -5'
29426 3' -54.2 NC_006151.1 + 41050 0.66 0.961871
Target:  5'- uGGggGUccuUGAugGUGguggugguGGugGugGGAGGUGg -3'
miRNA:   3'- -CCuuCA---ACU--CGC--------UCugCugCCUCCGC- -5'
29426 3' -54.2 NC_006151.1 + 5070 0.66 0.961871
Target:  5'- aGGAGGccGAgggccGCGGGGCcGCGGcGGGCGc -3'
miRNA:   3'- -CCUUCaaCU-----CGCUCUGcUGCC-UCCGC- -5'
29426 3' -54.2 NC_006151.1 + 103671 0.66 0.961871
Target:  5'- aGAAGgcGGcGCGc-GCGGCGGGGGUGc -3'
miRNA:   3'- cCUUCaaCU-CGCucUGCUGCCUCCGC- -5'
29426 3' -54.2 NC_006151.1 + 65393 0.66 0.961871
Target:  5'- cGGgcGcgccgUGAGCGAG-CGGCGGuacGCGu -3'
miRNA:   3'- -CCuuCa----ACUCGCUCuGCUGCCuc-CGC- -5'
29426 3' -54.2 NC_006151.1 + 90724 0.66 0.961871
Target:  5'- -------aGGCGGcGGCGACGGuGGCGg -3'
miRNA:   3'- ccuucaacUCGCU-CUGCUGCCuCCGC- -5'
29426 3' -54.2 NC_006151.1 + 139735 0.66 0.961871
Target:  5'- -------cAGCGGcGGCGACaGGAGGCGg -3'
miRNA:   3'- ccuucaacUCGCU-CUGCUG-CCUCCGC- -5'
29426 3' -54.2 NC_006151.1 + 40555 0.66 0.961871
Target:  5'- cGGuGGUggaAGCGGcGGCGGCGGccgcGGCGg -3'
miRNA:   3'- -CCuUCAac-UCGCU-CUGCUGCCu---CCGC- -5'
29426 3' -54.2 NC_006151.1 + 137592 0.66 0.958286
Target:  5'- cGAGGUcgGGGuCGGGAU--CGGGGGCGc -3'
miRNA:   3'- cCUUCAa-CUC-GCUCUGcuGCCUCCGC- -5'
29426 3' -54.2 NC_006151.1 + 33316 0.66 0.958286
Target:  5'- uGGGAccggGAcCGGGACagggGGCGGGGGCGg -3'
miRNA:   3'- -CCUUcaa-CUcGCUCUG----CUGCCUCCGC- -5'
29426 3' -54.2 NC_006151.1 + 96939 0.66 0.958286
Target:  5'- gGGAucgcGGgcGGGaGAGACGAUGG-GGUGa -3'
miRNA:   3'- -CCU----UCaaCUCgCUCUGCUGCCuCCGC- -5'
29426 3' -54.2 NC_006151.1 + 96781 0.66 0.958286
Target:  5'- gGGGAGgUGAGCgGAGAguccCGAgcCGGGGcGCGc -3'
miRNA:   3'- -CCUUCaACUCG-CUCU----GCU--GCCUC-CGC- -5'
29426 3' -54.2 NC_006151.1 + 127355 0.66 0.957915
Target:  5'- uGGucGGUcucgcccUGGGCgGGGACcGCGGGGGUGg -3'
miRNA:   3'- -CCu-UCA-------ACUCG-CUCUGcUGCCUCCGC- -5'
29426 3' -54.2 NC_006151.1 + 104848 0.66 0.954476
Target:  5'- cGGAGGcgGAccagGcCGcGGCGACGGAGcGCGc -3'
miRNA:   3'- -CCUUCaaCU----C-GCuCUGCUGCCUC-CGC- -5'
29426 3' -54.2 NC_006151.1 + 2700 0.66 0.954476
Target:  5'- cGggGUgcaGGCG-GGCGAaGGAGGCc -3'
miRNA:   3'- cCuuCAac-UCGCuCUGCUgCCUCCGc -5'
29426 3' -54.2 NC_006151.1 + 60730 0.66 0.954083
Target:  5'- cGAGGUgccgGAGCacGAGgcaGCGGCGGcucgcgaAGGCGg -3'
miRNA:   3'- cCUUCAa---CUCG--CUC---UGCUGCC-------UCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.