miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29428 5' -56 NC_006151.1 + 132042 0.66 0.902417
Target:  5'- gGCGGCGcgcGGCaGCGCGgcgGAGAACggcGGc -3'
miRNA:   3'- gCGCCGCu--CCG-CGUGU---UUCUUGa--CCa -5'
29428 5' -56 NC_006151.1 + 12353 0.66 0.902417
Target:  5'- aGgGGCGGGGaGCGCGAgcgGGAGaaGGUu -3'
miRNA:   3'- gCgCCGCUCCgCGUGUU---UCUUgaCCA- -5'
29428 5' -56 NC_006151.1 + 23006 0.66 0.902417
Target:  5'- gCGCGGgUGGGG-GCGCGGGGG--UGGUg -3'
miRNA:   3'- -GCGCC-GCUCCgCGUGUUUCUugACCA- -5'
29428 5' -56 NC_006151.1 + 71980 0.66 0.902417
Target:  5'- uGCGGCGGGG-GCA------GCUGGUa -3'
miRNA:   3'- gCGCCGCUCCgCGUguuucuUGACCA- -5'
29428 5' -56 NC_006151.1 + 76988 0.66 0.902417
Target:  5'- gCGCGGUGAGgaGCGCcGCGAGGG--UGGc -3'
miRNA:   3'- -GCGCCGCUC--CGCG-UGUUUCUugACCa -5'
29428 5' -56 NC_006151.1 + 137137 0.66 0.902417
Target:  5'- gCGCGGCGcgacgcGGCGC-CGGAGA--UGGc -3'
miRNA:   3'- -GCGCCGCu-----CCGCGuGUUUCUugACCa -5'
29428 5' -56 NC_006151.1 + 16973 0.66 0.902417
Target:  5'- uCGcCGGCGuGGCGC-C-AGGAGC-GGUu -3'
miRNA:   3'- -GC-GCCGCuCCGCGuGuUUCUUGaCCA- -5'
29428 5' -56 NC_006151.1 + 72820 0.66 0.902417
Target:  5'- uCGcCGGCGcccacGGGC-CGCuu-GAACUGGUa -3'
miRNA:   3'- -GC-GCCGC-----UCCGcGUGuuuCUUGACCA- -5'
29428 5' -56 NC_006151.1 + 99650 0.66 0.902417
Target:  5'- aCGUGGCucgccuuccGCGCGCAGAGccGCUGGg -3'
miRNA:   3'- -GCGCCGcuc------CGCGUGUUUCu-UGACCa -5'
29428 5' -56 NC_006151.1 + 11761 0.66 0.895933
Target:  5'- gGCGaGUGAGcGUGCGCGAAGGGg-GGa -3'
miRNA:   3'- gCGC-CGCUC-CGCGUGUUUCUUgaCCa -5'
29428 5' -56 NC_006151.1 + 21313 0.66 0.895933
Target:  5'- aGCGGUGGcgcgagacgcccGGCGCGgCGGGGGuccgcgGCUGGa -3'
miRNA:   3'- gCGCCGCU------------CCGCGU-GUUUCU------UGACCa -5'
29428 5' -56 NC_006151.1 + 127802 0.66 0.895933
Target:  5'- cCGCGcGCGGGG-GCGCGAGGuccuuGC-GGUu -3'
miRNA:   3'- -GCGC-CGCUCCgCGUGUUUCu----UGaCCA- -5'
29428 5' -56 NC_006151.1 + 83006 0.66 0.895933
Target:  5'- cCGCGGCGcAGaCGCGCGgcGAGGGCcccaGGUc -3'
miRNA:   3'- -GCGCCGC-UCcGCGUGU--UUCUUGa---CCA- -5'
29428 5' -56 NC_006151.1 + 66870 0.66 0.895272
Target:  5'- gGCGGCGcgaaGGGCGCGCccggccccgcgccGGAGGACg--- -3'
miRNA:   3'- gCGCCGC----UCCGCGUG-------------UUUCUUGacca -5'
29428 5' -56 NC_006151.1 + 121708 0.66 0.889215
Target:  5'- aGCGGCGGcucguGGCGguCcuGGGGCaGGUg -3'
miRNA:   3'- gCGCCGCU-----CCGCguGuuUCUUGaCCA- -5'
29428 5' -56 NC_006151.1 + 81538 0.66 0.889215
Target:  5'- cCGCGGCGGcgcgcuccgcGGUGCACAuGGccgUGGUg -3'
miRNA:   3'- -GCGCCGCU----------CCGCGUGUuUCuugACCA- -5'
29428 5' -56 NC_006151.1 + 105038 0.66 0.889215
Target:  5'- gGCGGCGcugcugcucGGCGCcguCGAGGAggcgcccgaGCUGGa -3'
miRNA:   3'- gCGCCGCu--------CCGCGu--GUUUCU---------UGACCa -5'
29428 5' -56 NC_006151.1 + 137762 0.66 0.889215
Target:  5'- cCGCGGCcuGGCGCGCGugcuccagcAGGccgugcuGCUGGa -3'
miRNA:   3'- -GCGCCGcuCCGCGUGU---------UUCu------UGACCa -5'
29428 5' -56 NC_006151.1 + 139657 0.66 0.889215
Target:  5'- uCGCGGCG-GGCGCGCcgcccGACaGGc -3'
miRNA:   3'- -GCGCCGCuCCGCGUGuuuc-UUGaCCa -5'
29428 5' -56 NC_006151.1 + 121195 0.66 0.889215
Target:  5'- aCGCGcuCGGGGCGCGCAcgcagcaccugGAGcccgacGACUGGc -3'
miRNA:   3'- -GCGCc-GCUCCGCGUGU-----------UUC------UUGACCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.