Results 41 - 60 of 259 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29429 | 3' | -56.4 | NC_006151.1 | + | 16977 | 0.66 | 0.873543 |
Target: 5'- -cGGCGU-GGCGCCAgGAGCgguuguggacccGCGCGa -3' miRNA: 3'- acCCGUAgUCGCGGUgUUUGa-----------CGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 142247 | 0.66 | 0.867583 |
Target: 5'- cGaGGCGUCGGUcaucGCgGCGAGgaGCGCc -3' miRNA: 3'- aC-CCGUAGUCG----CGgUGUUUgaCGCGc -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 56567 | 0.66 | 0.859938 |
Target: 5'- cGGGCGaC-GCGCCGCcgcccgacGGGCUgGUGCGg -3' miRNA: 3'- aCCCGUaGuCGCGGUG--------UUUGA-CGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 138730 | 0.66 | 0.859938 |
Target: 5'- cGGGUcguGUaCGcGCGCCGCG-ACUGcCGCGc -3' miRNA: 3'- aCCCG---UA-GU-CGCGGUGUuUGAC-GCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 68230 | 0.66 | 0.860712 |
Target: 5'- -aGGCG-CAGCGcCCGCGGGCgcgucagguagacgcGCGCGg -3' miRNA: 3'- acCCGUaGUCGC-GGUGUUUGa--------------CGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 51272 | 0.66 | 0.863022 |
Target: 5'- aGGGCAUCacgagcgcgcccucgGGgGCCGCcGGCcagguccGCGCGa -3' miRNA: 3'- aCCCGUAG---------------UCgCGGUGuUUGa------CGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 49037 | 0.66 | 0.863022 |
Target: 5'- cGGGCca-GGC-CCACGGGCUggccuucagcguccgGCGCGg -3' miRNA: 3'- aCCCGuagUCGcGGUGUUUGA---------------CGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 4215 | 0.66 | 0.867583 |
Target: 5'- aGGGCGgcCGGgG-CGCGGGCggGCGCGg -3' miRNA: 3'- aCCCGUa-GUCgCgGUGUUUGa-CGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 68277 | 0.66 | 0.867583 |
Target: 5'- cGcGGCGccgGGCGCCACGgcGGCcagGCGCGc -3' miRNA: 3'- aC-CCGUag-UCGCGGUGU--UUGa--CGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 99114 | 0.66 | 0.867583 |
Target: 5'- aGGGCGUgcUGGCGCUGCuGGACcccgggGCGCa -3' miRNA: 3'- aCCCGUA--GUCGCGGUG-UUUGa-----CGCGc -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 121991 | 0.66 | 0.867583 |
Target: 5'- aUGGGCggCGcGUGCCGCuuccACgcGCGCGu -3' miRNA: 3'- -ACCCGuaGU-CGCGGUGuu--UGa-CGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 4340 | 0.66 | 0.867583 |
Target: 5'- gGcGGCGaaGGCGgCGCGGACgcggGCGCa -3' miRNA: 3'- aC-CCGUagUCGCgGUGUUUGa---CGCGc -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 93449 | 0.66 | 0.867583 |
Target: 5'- cGGGgGUCGcCGCCGCGGg--GCGCu -3' miRNA: 3'- aCCCgUAGUcGCGGUGUUugaCGCGc -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 66862 | 0.67 | 0.835766 |
Target: 5'- aGGGCcggGGCGgCGCGAAggGCGCGc -3' miRNA: 3'- aCCCGuagUCGCgGUGUUUgaCGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 30336 | 0.67 | 0.835766 |
Target: 5'- gGaGGCggCGGCGgCGCGAGg-GCGCGa -3' miRNA: 3'- aC-CCGuaGUCGCgGUGUUUgaCGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 76075 | 0.67 | 0.835766 |
Target: 5'- aGGGCGcCAGCaGCgACAGggGCgGCGCc -3' miRNA: 3'- aCCCGUaGUCG-CGgUGUU--UGaCGCGc -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 134335 | 0.67 | 0.835766 |
Target: 5'- cGGGCAU---CGCCACGGAC-GUGCc -3' miRNA: 3'- aCCCGUAgucGCGGUGUUUGaCGCGc -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 68012 | 0.67 | 0.835766 |
Target: 5'- cGGGCucggCGGCGuCCAggucCAGGCggcccgccgGCGCGg -3' miRNA: 3'- aCCCGua--GUCGC-GGU----GUUUGa--------CGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 90973 | 0.67 | 0.835766 |
Target: 5'- --cGCGUCgacgcccuGGCGCCGCuGGCUgGCGCGc -3' miRNA: 3'- accCGUAG--------UCGCGGUGuUUGA-CGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 104032 | 0.67 | 0.835766 |
Target: 5'- gUGGaGCGcgcgCAGCGCCAgcucUggGCgcGCGCGg -3' miRNA: 3'- -ACC-CGUa---GUCGCGGU----GuuUGa-CGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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