miRNA display CGI


Results 81 - 100 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 130521 0.67 0.82732
Target:  5'- cGGGCGcgGGCGUCGCGuacACgcccccGCGCGa -3'
miRNA:   3'- aCCCGUagUCGCGGUGUu--UGa-----CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 104032 0.67 0.835766
Target:  5'- gUGGaGCGcgcgCAGCGCCAgcucUggGCgcGCGCGg -3'
miRNA:   3'- -ACC-CGUa---GUCGCGGU----GuuUGa-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 66862 0.67 0.835766
Target:  5'- aGGGCcggGGCGgCGCGAAggGCGCGc -3'
miRNA:   3'- aCCCGuagUCGCgGUGUUUgaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 30336 0.67 0.835766
Target:  5'- gGaGGCggCGGCGgCGCGAGg-GCGCGa -3'
miRNA:   3'- aC-CCGuaGUCGCgGUGUUUgaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 76075 0.67 0.835766
Target:  5'- aGGGCGcCAGCaGCgACAGggGCgGCGCc -3'
miRNA:   3'- aCCCGUaGUCG-CGgUGUU--UGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 134335 0.67 0.835766
Target:  5'- cGGGCAU---CGCCACGGAC-GUGCc -3'
miRNA:   3'- aCCCGUAgucGCGGUGUUUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 68012 0.67 0.835766
Target:  5'- cGGGCucggCGGCGuCCAggucCAGGCggcccgccgGCGCGg -3'
miRNA:   3'- aCCCGua--GUCGC-GGU----GUUUGa--------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 90973 0.67 0.835766
Target:  5'- --cGCGUCgacgcccuGGCGCCGCuGGCUgGCGCGc -3'
miRNA:   3'- accCGUAG--------UCGCGGUGuUUGA-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 83371 0.67 0.82732
Target:  5'- cGGGCGcgcaGGCGCCGCAGG-UGCuCGu -3'
miRNA:   3'- aCCCGUag--UCGCGGUGUUUgACGcGC- -5'
29429 3' -56.4 NC_006151.1 + 3950 0.67 0.82732
Target:  5'- cGGGCuccgCGG-GCC-CGGGCcGCGCGg -3'
miRNA:   3'- aCCCGua--GUCgCGGuGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 64883 0.67 0.818691
Target:  5'- cGGGag-CAGgGCCGCGAagagcacgcaGCgGCGCGc -3'
miRNA:   3'- aCCCguaGUCgCGGUGUU----------UGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 3681 0.67 0.818691
Target:  5'- gGGGCggCGG-GCCcCGGGC-GCGCGg -3'
miRNA:   3'- aCCCGuaGUCgCGGuGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 78703 0.67 0.818691
Target:  5'- gGGGCcUCGuCGCCGCGAcgGCgcccgugggGCGCGc -3'
miRNA:   3'- aCCCGuAGUcGCGGUGUU--UGa--------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 84507 0.67 0.818691
Target:  5'- cGGGCAgCGcGCGCCACuucAUcGCGCc -3'
miRNA:   3'- aCCCGUaGU-CGCGGUGuu-UGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 100097 0.67 0.818691
Target:  5'- -cGGCGcCGGCGCCGCccucGCUG-GCGg -3'
miRNA:   3'- acCCGUaGUCGCGGUGuu--UGACgCGC- -5'
29429 3' -56.4 NC_006151.1 + 122179 0.67 0.818691
Target:  5'- cGGGCucgUGGUGCCGCcgGAGCUGUaCGa -3'
miRNA:   3'- aCCCGua-GUCGCGGUG--UUUGACGcGC- -5'
29429 3' -56.4 NC_006151.1 + 82985 0.67 0.82475
Target:  5'- cGcGCGUCuGCGCCgccacggccgcggcGCAGAC-GCGCGg -3'
miRNA:   3'- aCcCGUAGuCGCGG--------------UGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 56048 0.67 0.82732
Target:  5'- aGGGC---GGCGCgCugAcGCUGCGCc -3'
miRNA:   3'- aCCCGuagUCGCG-GugUuUGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 72102 0.67 0.82732
Target:  5'- cUGGGCGagcggCAGCGUCAUggGgaaGCGCa -3'
miRNA:   3'- -ACCCGUa----GUCGCGGUGuuUga-CGCGc -5'
29429 3' -56.4 NC_006151.1 + 81824 0.67 0.82732
Target:  5'- gGGGCAgcCGGCccGCgCAUGAGCagGCGCGa -3'
miRNA:   3'- aCCCGUa-GUCG--CG-GUGUUUGa-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.