miRNA display CGI


Results 21 - 40 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 74761 0.74 0.434204
Target:  5'- cUGGauGCA-CuGCGCCACGAGCcGCGCGa -3'
miRNA:   3'- -ACC--CGUaGuCGCGGUGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 69536 0.74 0.442413
Target:  5'- aGGGCGcccugcaUCAGCccgcucGCCACGuGGCUGCGCa -3'
miRNA:   3'- aCCCGU-------AGUCG------CGGUGU-UUGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 42657 0.74 0.407494
Target:  5'- cGGGCAUCccCGCCGCGgggAugUGUGCGu -3'
miRNA:   3'- aCCCGUAGucGCGGUGU---UugACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 96631 0.74 0.407494
Target:  5'- aGGGCGcgCAGCGCCuCGAGCUcgGCgGCGa -3'
miRNA:   3'- aCCCGUa-GUCGCGGuGUUUGA--CG-CGC- -5'
29429 3' -56.4 NC_006151.1 + 22328 0.74 0.434204
Target:  5'- cGGGCGacCAGCGCCGCcAAUaGCGCu -3'
miRNA:   3'- aCCCGUa-GUCGCGGUGuUUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 113021 0.74 0.425187
Target:  5'- cGGGCGacgacgCGuGCGCCGgGuGCUGCGCGg -3'
miRNA:   3'- aCCCGUa-----GU-CGCGGUgUuUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 15057 0.74 0.434204
Target:  5'- gGGGCccCGGCGCCuu---CUGCGCGg -3'
miRNA:   3'- aCCCGuaGUCGCGGuguuuGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 85048 0.74 0.434204
Target:  5'- aUGGGCGUgacgaccaCGGCGCUGCAGGcCUGCGgGc -3'
miRNA:   3'- -ACCCGUA--------GUCGCGGUGUUU-GACGCgC- -5'
29429 3' -56.4 NC_006151.1 + 106405 0.73 0.452565
Target:  5'- cGGGCA--GGCGCUguuCAcGCUGCGCGu -3'
miRNA:   3'- aCCCGUagUCGCGGu--GUuUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 123039 0.73 0.490504
Target:  5'- gUGGGCGgacCuGCcgGCCGCGGcGCUGCGCGa -3'
miRNA:   3'- -ACCCGUa--GuCG--CGGUGUU-UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 122374 0.73 0.479918
Target:  5'- cGGGC-UCGacgaggcGCGCCGCGGGC-GCGCGc -3'
miRNA:   3'- aCCCGuAGU-------CGCGGUGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 64221 0.73 0.460964
Target:  5'- gUGGGCGccUCGGCguacaggGCCGCGAcgGCgGCGCGg -3'
miRNA:   3'- -ACCCGU--AGUCG-------CGGUGUU--UGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 133489 0.73 0.471341
Target:  5'- cGGGCGUCaccuuGGCGgCGCGGGggGCGCGg -3'
miRNA:   3'- aCCCGUAG-----UCGCgGUGUUUgaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 60804 0.73 0.465666
Target:  5'- cUGGGCucgccgcgcagcuccAcgagCAGCuCCACGAGCUGCGCGu -3'
miRNA:   3'- -ACCCG---------------Ua---GUCGcGGUGUUUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 30614 0.73 0.452565
Target:  5'- cGGGCgGUCGGCGUgCGC--GCUGUGCGg -3'
miRNA:   3'- aCCCG-UAGUCGCG-GUGuuUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 60472 0.73 0.490504
Target:  5'- aGGGCGUgaAGCGCgCGCAGAa-GCGCGc -3'
miRNA:   3'- aCCCGUAg-UCGCG-GUGUUUgaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 82007 0.72 0.510021
Target:  5'- aGGGCGgccgCGuGCGCCGCcgacAGCUGgGCGa -3'
miRNA:   3'- aCCCGUa---GU-CGCGGUGu---UUGACgCGC- -5'
29429 3' -56.4 NC_006151.1 + 54637 0.72 0.519901
Target:  5'- gGGGaagCGGCGgCGCGAgcGCUGCGUGg -3'
miRNA:   3'- aCCCguaGUCGCgGUGUU--UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 122984 0.72 0.519901
Target:  5'- gGGGCGUCGGCGacgaagACGGGCccgGCGCGc -3'
miRNA:   3'- aCCCGUAGUCGCgg----UGUUUGa--CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 3262 0.72 0.510021
Target:  5'- gGGGCGccgCGGCGCgCgGCGAugUGCGCc -3'
miRNA:   3'- aCCCGUa--GUCGCG-G-UGUUugACGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.