miRNA display CGI


Results 41 - 60 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 115186 0.72 0.519901
Target:  5'- gGGGCGcUCcagccagcGCGCCGCGGGCgcgcGCGCGa -3'
miRNA:   3'- aCCCGU-AGu-------CGCGGUGUUUGa---CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 98341 0.72 0.529856
Target:  5'- cGGGCcgCgAGaCGcCCGCGGGCgUGCGCGg -3'
miRNA:   3'- aCCCGuaG-UC-GC-GGUGUUUG-ACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 121087 0.72 0.529856
Target:  5'- cGGGCggCGGCGCCG--GGCUGCaCGa -3'
miRNA:   3'- aCCCGuaGUCGCGGUguUUGACGcGC- -5'
29429 3' -56.4 NC_006151.1 + 64939 0.72 0.529856
Target:  5'- cGcGCGUCAGCGCCugGccgcGCUGCGgGc -3'
miRNA:   3'- aCcCGUAGUCGCGGugUu---UGACGCgC- -5'
29429 3' -56.4 NC_006151.1 + 135108 0.72 0.529856
Target:  5'- cGGGCGgcggUAGCGCgCgggGCGGGCUGgGCGg -3'
miRNA:   3'- aCCCGUa---GUCGCG-G---UGUUUGACgCGC- -5'
29429 3' -56.4 NC_006151.1 + 103746 0.72 0.529856
Target:  5'- cGcGGCAgugCGaggagcGCGCCGCGGcGCUGCGCGa -3'
miRNA:   3'- aC-CCGUa--GU------CGCGGUGUU-UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 76930 0.72 0.529856
Target:  5'- cGGGCcacguUCcGCGCCACGagGACgGCGCa -3'
miRNA:   3'- aCCCGu----AGuCGCGGUGU--UUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 71653 0.72 0.538874
Target:  5'- gGGGcCGUCGaagaugcacacgcGCGCCACGGGCcGCGUGc -3'
miRNA:   3'- aCCC-GUAGU-------------CGCGGUGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 64401 0.72 0.539879
Target:  5'- cGGcGCAgCAGCGuCCACAGGucgcucucgcuCUGCGCGc -3'
miRNA:   3'- aCC-CGUaGUCGC-GGUGUUU-----------GACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 30253 0.72 0.545924
Target:  5'- cGGGagagacgacgGGCGCCACAGACagcgGCGCGg -3'
miRNA:   3'- aCCCguag------UCGCGGUGUUUGa---CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 75269 0.72 0.549966
Target:  5'- cGGGCuccuggcgCAGCGCCGCcAGCgugGCGUc -3'
miRNA:   3'- aCCCGua------GUCGCGGUGuUUGa--CGCGc -5'
29429 3' -56.4 NC_006151.1 + 17866 0.71 0.559093
Target:  5'- cGGGCGaugaugcccccgaUCAGCGCCgacagcgaGCAGAUgaccaGCGCGg -3'
miRNA:   3'- aCCCGU-------------AGUCGCGG--------UGUUUGa----CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 78414 0.71 0.559093
Target:  5'- cGGGCcgCgAGCGCCGuggcccacgccguCAAccgcguGCUGCGCGa -3'
miRNA:   3'- aCCCGuaG-UCGCGGU-------------GUU------UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 59150 0.71 0.56011
Target:  5'- cGGGCGgguccaggcCGGCGUCGCGcAGCaGCGCGg -3'
miRNA:   3'- aCCCGUa--------GUCGCGGUGU-UUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 99267 0.71 0.56011
Target:  5'- cGGGCuUCAcGCGCCGCc-ACUGCGa- -3'
miRNA:   3'- aCCCGuAGU-CGCGGUGuuUGACGCgc -5'
29429 3' -56.4 NC_006151.1 + 81264 0.71 0.566222
Target:  5'- aGGGCGagCAGCGCCucggcggggaucuCGGGCgcgGCGCGc -3'
miRNA:   3'- aCCCGUa-GUCGCGGu------------GUUUGa--CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 67843 0.71 0.570305
Target:  5'- gGGGC-UCAGCaGCCcgGCGAGCcgGCGCc -3'
miRNA:   3'- aCCCGuAGUCG-CGG--UGUUUGa-CGCGc -5'
29429 3' -56.4 NC_006151.1 + 117787 0.71 0.570305
Target:  5'- cGGGCGg-GGCGCCACGcccGGCgGgGCGg -3'
miRNA:   3'- aCCCGUagUCGCGGUGU---UUGaCgCGC- -5'
29429 3' -56.4 NC_006151.1 + 54932 0.71 0.570305
Target:  5'- aGGuGCuggcGUGCCACGcGCUGCGCGa -3'
miRNA:   3'- aCC-CGuaguCGCGGUGUuUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 103785 0.71 0.580545
Target:  5'- cGGaGCGcuggCGGCGCUGCAGGCcGCGCu -3'
miRNA:   3'- aCC-CGUa---GUCGCGGUGUUUGaCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.