miRNA display CGI


Results 61 - 80 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 54404 0.71 0.580545
Target:  5'- cGcGGCcUCGGCGCCG-AGGCgcugGCGCGg -3'
miRNA:   3'- aC-CCGuAGUCGCGGUgUUUGa---CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 106371 0.71 0.580545
Target:  5'- cGGGCGcgCGccCGCCGCGGcgcccGCUGCGCGa -3'
miRNA:   3'- aCCCGUa-GUc-GCGGUGUU-----UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 117588 0.71 0.589794
Target:  5'- aUGGGCcgCguGGCGCCGCcgcaguagaccguGGGCUcGCGCGc -3'
miRNA:   3'- -ACCCGuaG--UCGCGGUG-------------UUUGA-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 120320 0.71 0.601132
Target:  5'- cGGGCAgccucUCGGaCGCCGCGcGCgcccGCGUGg -3'
miRNA:   3'- aCCCGU-----AGUC-GCGGUGUuUGa---CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 89143 0.71 0.601132
Target:  5'- gGGGCGUCGagaccGCGCCcgccuCGGGCgaggcggGCGCGg -3'
miRNA:   3'- aCCCGUAGU-----CGCGGu----GUUUGa------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 132291 0.71 0.601132
Target:  5'- cUGGGCcaccaccugGUCcgcgugcaGGCGCCACGAgaGCUcGCGCGc -3'
miRNA:   3'- -ACCCG---------UAG--------UCGCGGUGUU--UGA-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 105184 0.71 0.601132
Target:  5'- aGcGCAUCgaGGCGCUGCAGacGCUGCGCc -3'
miRNA:   3'- aCcCGUAG--UCGCGGUGUU--UGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 130481 0.71 0.601132
Target:  5'- aUGGccugccGCAgcgcgCGGCGCCACAcGCcGCGCGu -3'
miRNA:   3'- -ACC------CGUa----GUCGCGGUGUuUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 5079 0.71 0.601132
Target:  5'- aGGGCcgCGGgGCCGCGGcggGCGCc -3'
miRNA:   3'- aCCCGuaGUCgCGGUGUUugaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 90088 0.71 0.611464
Target:  5'- aGGGCccccgCcGCGCCGCAGGCcGCgGCGa -3'
miRNA:   3'- aCCCGua---GuCGCGGUGUUUGaCG-CGC- -5'
29429 3' -56.4 NC_006151.1 + 52920 0.7 0.621812
Target:  5'- gGGaGCGUgaAGa-CCACAAACUGCGCGu -3'
miRNA:   3'- aCC-CGUAg-UCgcGGUGUUUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 104864 0.7 0.621812
Target:  5'- cGcGGCGaCGgagcGCGCCACGcgccuGCUGCGCGa -3'
miRNA:   3'- aC-CCGUaGU----CGCGGUGUu----UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 85935 0.7 0.632168
Target:  5'- cUGGGCcugcugcugCAGCaGCCGCAc-CUGCGCa -3'
miRNA:   3'- -ACCCGua-------GUCG-CGGUGUuuGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 55473 0.7 0.632168
Target:  5'- gGGGCGcgcgccCGGCGCCGCGGACgGCcagccgccGCGg -3'
miRNA:   3'- aCCCGUa-----GUCGCGGUGUUUGaCG--------CGC- -5'
29429 3' -56.4 NC_006151.1 + 52436 0.7 0.642524
Target:  5'- cGGGCAcgcgCAGCGCCGCcgccguGACggcggccagGCGCc -3'
miRNA:   3'- aCCCGUa---GUCGCGGUGu-----UUGa--------CGCGc -5'
29429 3' -56.4 NC_006151.1 + 84137 0.7 0.642524
Target:  5'- cGGGCAgCGGCacgaggggcuguGCCA---GCUGCGCGa -3'
miRNA:   3'- aCCCGUaGUCG------------CGGUguuUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 4318 0.7 0.642524
Target:  5'- gGGGCAc--GCGgC-CGGGCUGCGCGg -3'
miRNA:   3'- aCCCGUaguCGCgGuGUUUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 99081 0.7 0.642524
Target:  5'- cGGGCAccgUGGCGCgGCGc-CUGCGCa -3'
miRNA:   3'- aCCCGUa--GUCGCGgUGUuuGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 118154 0.7 0.642524
Target:  5'- cGcGGCggUGGCGCCGCu-GgUGCGCGg -3'
miRNA:   3'- aC-CCGuaGUCGCGGUGuuUgACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 94678 0.7 0.642524
Target:  5'- cGGGCAgcuccccgaaGGCcgcgGCCACGGaccACUGCGCGc -3'
miRNA:   3'- aCCCGUag--------UCG----CGGUGUU---UGACGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.