miRNA display CGI


Results 81 - 100 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 94678 0.7 0.642524
Target:  5'- cGGGCAgcuccccgaaGGCcgcgGCCACGGaccACUGCGCGc -3'
miRNA:   3'- aCCCGUag--------UCG----CGGUGUU---UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 85165 0.7 0.651837
Target:  5'- gGGGC--CGGCGCCGCGGgcgccgccgccccGCUGgGCa -3'
miRNA:   3'- aCCCGuaGUCGCGGUGUU-------------UGACgCGc -5'
29429 3' -56.4 NC_006151.1 + 82610 0.7 0.652872
Target:  5'- gUGGGCccgCgcgcgGGCGCCGCGGuggGCGCGg -3'
miRNA:   3'- -ACCCGua-G-----UCGCGGUGUUugaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 117266 0.7 0.652872
Target:  5'- cGGGCcgcgcgCGGcCGCCGCcGACaGCGCGc -3'
miRNA:   3'- aCCCGua----GUC-GCGGUGuUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 119037 0.7 0.652872
Target:  5'- cGGGCGccaaggacggCGGCGCCGCGGccgccuccGCggGCGCGc -3'
miRNA:   3'- aCCCGUa---------GUCGCGGUGUU--------UGa-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 21558 0.7 0.652872
Target:  5'- cUGGGCcUCGGCGagcCCGCcgaGGGCcGCGCGg -3'
miRNA:   3'- -ACCCGuAGUCGC---GGUG---UUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 59859 0.7 0.652872
Target:  5'- gGGGCG-CAGCuGCCGCAGcaccgcugGCUG-GCGa -3'
miRNA:   3'- aCCCGUaGUCG-CGGUGUU--------UGACgCGC- -5'
29429 3' -56.4 NC_006151.1 + 136422 0.7 0.652872
Target:  5'- gGGGCcccgCGGCGgCGCAcGCcGCGCGc -3'
miRNA:   3'- aCCCGua--GUCGCgGUGUuUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 30740 0.7 0.663202
Target:  5'- cGGGCccggAGUGCCGCGGGCgGgGCGg -3'
miRNA:   3'- aCCCGuag-UCGCGGUGUUUGaCgCGC- -5'
29429 3' -56.4 NC_006151.1 + 69720 0.7 0.663202
Target:  5'- gGGGCAgCAGCGCguCGAugUGgcccccCGCGg -3'
miRNA:   3'- aCCCGUaGUCGCGguGUUugAC------GCGC- -5'
29429 3' -56.4 NC_006151.1 + 18664 0.7 0.672478
Target:  5'- cGGGCGUCguccggccguacgGGUuCCACGGGC-GCGCGg -3'
miRNA:   3'- aCCCGUAG-------------UCGcGGUGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 103302 0.7 0.673508
Target:  5'- cGcGGCucgcgCGGCGCgACGccgAGCUGCGCa -3'
miRNA:   3'- aC-CCGua---GUCGCGgUGU---UUGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 101243 0.7 0.673508
Target:  5'- gGGGCAUguGCGCCAUcAGCga-GCu -3'
miRNA:   3'- aCCCGUAguCGCGGUGuUUGacgCGc -5'
29429 3' -56.4 NC_006151.1 + 64637 0.69 0.682753
Target:  5'- gGGGCG-CGGCGCCccgcgcaggaaccGCAGGaaggUGCGCGc -3'
miRNA:   3'- aCCCGUaGUCGCGG-------------UGUUUg---ACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 117198 0.69 0.682753
Target:  5'- gGGGCGUCguaguaguagacgGGCGCgGCGucGACgacGCGCGc -3'
miRNA:   3'- aCCCGUAG-------------UCGCGgUGU--UUGa--CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 128044 0.69 0.683778
Target:  5'- cGcGGCAgCGGCGgCAgCGgcGGCUGCGCGg -3'
miRNA:   3'- aC-CCGUaGUCGCgGU-GU--UUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 111250 0.69 0.683778
Target:  5'- aGGGUGUgCAGCagcgagGCCGgGAACcGCGCGg -3'
miRNA:   3'- aCCCGUA-GUCG------CGGUgUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 39476 0.69 0.683778
Target:  5'- -uGGCccgGGUGCCGCGAGCUccGCGCGg -3'
miRNA:   3'- acCCGuagUCGCGGUGUUUGA--CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 127471 0.69 0.694005
Target:  5'- cUGGGCGgcgCGGaacgaGCCGCGGACcccGCGCc -3'
miRNA:   3'- -ACCCGUa--GUCg----CGGUGUUUGa--CGCGc -5'
29429 3' -56.4 NC_006151.1 + 90334 0.69 0.694005
Target:  5'- aUGGGCAggcgCAGCaugGCCAUgAGGCUG-GCGa -3'
miRNA:   3'- -ACCCGUa---GUCG---CGGUG-UUUGACgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.