miRNA display CGI


Results 61 - 80 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 105727 0.67 0.835766
Target:  5'- cGGcGCcgugCGcGCGCCugAAGCaGCGCGu -3'
miRNA:   3'- aCC-CGua--GU-CGCGGugUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 56048 0.67 0.82732
Target:  5'- aGGGC---GGCGCgCugAcGCUGCGCc -3'
miRNA:   3'- aCCCGuagUCGCG-GugUuUGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 72102 0.67 0.82732
Target:  5'- cUGGGCGagcggCAGCGUCAUggGgaaGCGCa -3'
miRNA:   3'- -ACCCGUa----GUCGCGGUGuuUga-CGCGc -5'
29429 3' -56.4 NC_006151.1 + 81824 0.67 0.82732
Target:  5'- gGGGCAgcCGGCccGCgCAUGAGCagGCGCGa -3'
miRNA:   3'- aCCCGUa-GUCG--CG-GUGUUUGa-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 3950 0.67 0.82732
Target:  5'- cGGGCuccgCGG-GCC-CGGGCcGCGCGg -3'
miRNA:   3'- aCCCGua--GUCgCGGuGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 83371 0.67 0.82732
Target:  5'- cGGGCGcgcaGGCGCCGCAGG-UGCuCGu -3'
miRNA:   3'- aCCCGUag--UCGCGGUGUUUgACGcGC- -5'
29429 3' -56.4 NC_006151.1 + 98987 0.67 0.82732
Target:  5'- gUGGGCgagGUCAaCGCCAC--GCcGCGCa -3'
miRNA:   3'- -ACCCG---UAGUcGCGGUGuuUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 119963 0.67 0.82732
Target:  5'- cGGGCGcgCuGUGCCcggcgACGAGCUuccugGCGCGg -3'
miRNA:   3'- aCCCGUa-GuCGCGG-----UGUUUGA-----CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 130521 0.67 0.82732
Target:  5'- cGGGCGcgGGCGUCGCGuacACgcccccGCGCGa -3'
miRNA:   3'- aCCCGUagUCGCGGUGUu--UGa-----CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 82985 0.67 0.82475
Target:  5'- cGcGCGUCuGCGCCgccacggccgcggcGCAGAC-GCGCGg -3'
miRNA:   3'- aCcCGUAGuCGCGG--------------UGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 4020 0.67 0.818691
Target:  5'- aGGGCcgCGGCGUaggucCAGGCggccucgcggGCGCGg -3'
miRNA:   3'- aCCCGuaGUCGCGgu---GUUUGa---------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 64883 0.67 0.818691
Target:  5'- cGGGag-CAGgGCCGCGAagagcacgcaGCgGCGCGc -3'
miRNA:   3'- aCCCguaGUCgCGGUGUU----------UGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 3681 0.67 0.818691
Target:  5'- gGGGCggCGG-GCCcCGGGC-GCGCGg -3'
miRNA:   3'- aCCCGuaGUCgCGGuGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 78703 0.67 0.818691
Target:  5'- gGGGCcUCGuCGCCGCGAcgGCgcccgugggGCGCGc -3'
miRNA:   3'- aCCCGuAGUcGCGGUGUU--UGa--------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 84507 0.67 0.818691
Target:  5'- cGGGCAgCGcGCGCCACuucAUcGCGCc -3'
miRNA:   3'- aCCCGUaGU-CGCGGUGuu-UGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 100097 0.67 0.818691
Target:  5'- -cGGCGcCGGCGCCGCccucGCUG-GCGg -3'
miRNA:   3'- acCCGUaGUCGCGGUGuu--UGACgCGC- -5'
29429 3' -56.4 NC_006151.1 + 122179 0.67 0.818691
Target:  5'- cGGGCucgUGGUGCCGCcgGAGCUGUaCGa -3'
miRNA:   3'- aCCCGua-GUCGCGGUG--UUUGACGcGC- -5'
29429 3' -56.4 NC_006151.1 + 91110 0.67 0.816945
Target:  5'- -cGGCcgCGGCGCCcuucgccacggcgGCGAGCUuggccaccuggggGCGCGa -3'
miRNA:   3'- acCCGuaGUCGCGG-------------UGUUUGA-------------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 128236 0.67 0.813431
Target:  5'- gUGGGCGcCAGguCGCCgaucaggugguggaaGCGGcACUGCGCGc -3'
miRNA:   3'- -ACCCGUaGUC--GCGG---------------UGUU-UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 135669 0.67 0.80989
Target:  5'- --cGCGUCcuguaCGCCACGgacGGCUGCGCGa -3'
miRNA:   3'- accCGUAGuc---GCGGUGU---UUGACGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.