miRNA display CGI


Results 41 - 60 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 30902 0.66 0.859938
Target:  5'- cGGaGCGcgcggUAGCGcCCGCGGGCggcccGCGCGg -3'
miRNA:   3'- aCC-CGUa----GUCGC-GGUGUUUGa----CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 31163 0.69 0.72433
Target:  5'- cUGGGUcgCAGCGCCcUAAACUugGCaCGg -3'
miRNA:   3'- -ACCCGuaGUCGCGGuGUUUGA--CGcGC- -5'
29429 3' -56.4 NC_006151.1 + 31636 0.69 0.72433
Target:  5'- -cGGCAcgAGCGCaCGCGGGC-GCGCGg -3'
miRNA:   3'- acCCGUagUCGCG-GUGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 34595 0.67 0.80989
Target:  5'- gGGGCGcccUCggAGCGCgCGcCGAGCgcgagGCGCGg -3'
miRNA:   3'- aCCCGU---AG--UCGCG-GU-GUUUGa----CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 36622 0.67 0.800923
Target:  5'- cGGGCcggucUCGGCGCCcgGCGgcGGCgGCGCc -3'
miRNA:   3'- aCCCGu----AGUCGCGG--UGU--UUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 37862 0.68 0.753924
Target:  5'- cGGGCc---GCGCCGCGGACccccGCGCc -3'
miRNA:   3'- aCCCGuaguCGCGGUGUUUGa---CGCGc -5'
29429 3' -56.4 NC_006151.1 + 39476 0.69 0.683778
Target:  5'- -uGGCccgGGUGCCGCGAGCUccGCGCGg -3'
miRNA:   3'- acCCGuagUCGCGGUGUUUGA--CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 39808 0.69 0.704179
Target:  5'- gGGGC-UCGGCGCCcC--GCUGCGg- -3'
miRNA:   3'- aCCCGuAGUCGCGGuGuuUGACGCgc -5'
29429 3' -56.4 NC_006151.1 + 41749 0.66 0.875011
Target:  5'- gUGGGgAcCGGCGUCACGuccGGCggaaguUGCGCGc -3'
miRNA:   3'- -ACCCgUaGUCGCGGUGU---UUG------ACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 42657 0.74 0.407494
Target:  5'- cGGGCAUCccCGCCGCGgggAugUGUGCGu -3'
miRNA:   3'- aCCCGUAGucGCGGUGU---UugACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 49037 0.66 0.863022
Target:  5'- cGGGCca-GGC-CCACGGGCUggccuucagcguccgGCGCGg -3'
miRNA:   3'- aCCCGuagUCGcGGUGUUUGA---------------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 49170 0.66 0.875011
Target:  5'- cUGGGC----GCGCCGCGGgguGCUGCuGCu -3'
miRNA:   3'- -ACCCGuaguCGCGGUGUU---UGACG-CGc -5'
29429 3' -56.4 NC_006151.1 + 50465 0.68 0.773119
Target:  5'- cGGGCGcUC-GCGCCA---GCgcgGCGCGa -3'
miRNA:   3'- aCCCGU-AGuCGCGGUguuUGa--CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 51224 0.67 0.800923
Target:  5'- cGGGCccgcgcaGGCGgCGCGAGCgcucgGCGCa -3'
miRNA:   3'- aCCCGuag----UCGCgGUGUUUGa----CGCGc -5'
29429 3' -56.4 NC_006151.1 + 51272 0.66 0.863022
Target:  5'- aGGGCAUCacgagcgcgcccucgGGgGCCGCcGGCcagguccGCGCGa -3'
miRNA:   3'- aCCCGUAG---------------UCgCGGUGuUUGa------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 52436 0.7 0.642524
Target:  5'- cGGGCAcgcgCAGCGCCGCcgccguGACggcggccagGCGCc -3'
miRNA:   3'- aCCCGUa---GUCGCGGUGu-----UUGa--------CGCGc -5'
29429 3' -56.4 NC_006151.1 + 52920 0.7 0.621812
Target:  5'- gGGaGCGUgaAGa-CCACAAACUGCGCGu -3'
miRNA:   3'- aCC-CGUAg-UCgcGGUGUUUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 53266 0.66 0.852083
Target:  5'- cGcGGCA-CAGCuGCCGCGcguGCUcgaaGCGCGa -3'
miRNA:   3'- aC-CCGUaGUCG-CGGUGUu--UGA----CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 53345 0.75 0.373526
Target:  5'- gGGGCGcgCGcGCGCCGCGuACUGCGUc -3'
miRNA:   3'- aCCCGUa-GU-CGCGGUGUuUGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 53669 0.77 0.29735
Target:  5'- gGGGCAcgcguagcugUAGCGCC-CGAGCUGCGCc -3'
miRNA:   3'- aCCCGUa---------GUCGCGGuGUUUGACGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.