miRNA display CGI


Results 61 - 80 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 54087 0.66 0.859938
Target:  5'- cUGcGGCGgcggCGGCgGCCAUGucGGCUGCGaCGg -3'
miRNA:   3'- -AC-CCGUa---GUCG-CGGUGU--UUGACGC-GC- -5'
29429 3' -56.4 NC_006151.1 + 54404 0.71 0.580545
Target:  5'- cGcGGCcUCGGCGCCG-AGGCgcugGCGCGg -3'
miRNA:   3'- aC-CCGuAGUCGCGGUgUUUGa---CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 54637 0.72 0.519901
Target:  5'- gGGGaagCGGCGgCGCGAgcGCUGCGUGg -3'
miRNA:   3'- aCCCguaGUCGCgGUGUU--UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 54932 0.71 0.570305
Target:  5'- aGGuGCuggcGUGCCACGcGCUGCGCGa -3'
miRNA:   3'- aCC-CGuaguCGCGGUGUuUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 55121 0.67 0.790879
Target:  5'- aGGGCAU--GCGCCACAucggcGACaucacggagacggUGCGCu -3'
miRNA:   3'- aCCCGUAguCGCGGUGU-----UUG-------------ACGCGc -5'
29429 3' -56.4 NC_006151.1 + 55224 0.66 0.852083
Target:  5'- cGGGCAccaCGGCGCCG---GC-GCGCa -3'
miRNA:   3'- aCCCGUa--GUCGCGGUguuUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 55473 0.7 0.632168
Target:  5'- gGGGCGcgcgccCGGCGCCGCGGACgGCcagccgccGCGg -3'
miRNA:   3'- aCCCGUa-----GUCGCGGUGUUUGaCG--------CGC- -5'
29429 3' -56.4 NC_006151.1 + 56048 0.67 0.82732
Target:  5'- aGGGC---GGCGCgCugAcGCUGCGCc -3'
miRNA:   3'- aCCCGuagUCGCG-GugUuUGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 56377 0.69 0.72433
Target:  5'- cGGcGCcugcugcacGUCGGCGCCACGcGC-GCGCu -3'
miRNA:   3'- aCC-CG---------UAGUCGCGGUGUuUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 56567 0.66 0.859938
Target:  5'- cGGGCGaC-GCGCCGCcgcccgacGGGCUgGUGCGg -3'
miRNA:   3'- aCCCGUaGuCGCGGUG--------UUUGA-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 56941 0.78 0.257732
Target:  5'- gGGGCGucgccggcgcUCAGCGCCuCGAGC-GCGCGg -3'
miRNA:   3'- aCCCGU----------AGUCGCGGuGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 57091 0.82 0.133542
Target:  5'- aGGcGCAcgCAGCGCCGCGAGCaGCGCGc -3'
miRNA:   3'- aCC-CGUa-GUCGCGGUGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 57289 0.77 0.276976
Target:  5'- aGGGCGUcCAGCGCgGCcuuGGCgGCGCGg -3'
miRNA:   3'- aCCCGUA-GUCGCGgUGu--UUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 57980 0.75 0.390268
Target:  5'- gUGGGCggCGagcGCGCCGCGGACcgccuccgGCGCGg -3'
miRNA:   3'- -ACCCGuaGU---CGCGGUGUUUGa-------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 58421 0.75 0.397961
Target:  5'- cUGGGCGUgCGGCaGCCACGccucgguGGCgUGCGCGc -3'
miRNA:   3'- -ACCCGUA-GUCG-CGGUGU-------UUG-ACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 58659 0.68 0.763581
Target:  5'- aGGGCGcggcgCAGgGCCGCcauGACcGCGCc -3'
miRNA:   3'- aCCCGUa----GUCgCGGUGu--UUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 59150 0.71 0.56011
Target:  5'- cGGGCGgguccaggcCGGCGUCGCGcAGCaGCGCGg -3'
miRNA:   3'- aCCCGUa--------GUCGCGGUGU-UUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 59859 0.7 0.652872
Target:  5'- gGGGCG-CAGCuGCCGCAGcaccgcugGCUG-GCGa -3'
miRNA:   3'- aCCCGUaGUCG-CGGUGUU--------UGACgCGC- -5'
29429 3' -56.4 NC_006151.1 + 60107 0.81 0.164356
Target:  5'- cGGGCggCAGCGgCGCugGAACUGCGCGc -3'
miRNA:   3'- aCCCGuaGUCGCgGUG--UUUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 60472 0.73 0.490504
Target:  5'- aGGGCGUgaAGCGCgCGCAGAa-GCGCGc -3'
miRNA:   3'- aCCCGUAg-UCGCG-GUGUUUgaCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.