miRNA display CGI


Results 81 - 100 of 259 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 60804 0.73 0.465666
Target:  5'- cUGGGCucgccgcgcagcuccAcgagCAGCuCCACGAGCUGCGCGu -3'
miRNA:   3'- -ACCCG---------------Ua---GUCGcGGUGUUUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 60917 0.66 0.875011
Target:  5'- cGGGCcaGUC-GCGCCAUggugggcgaguaGAGCUGCcccaGCGu -3'
miRNA:   3'- aCCCG--UAGuCGCGGUG------------UUUGACG----CGC- -5'
29429 3' -56.4 NC_006151.1 + 64221 0.73 0.460964
Target:  5'- gUGGGCGccUCGGCguacaggGCCGCGAcgGCgGCGCGg -3'
miRNA:   3'- -ACCCGU--AGUCG-------CGGUGUU--UGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 64401 0.72 0.539879
Target:  5'- cGGcGCAgCAGCGuCCACAGGucgcucucgcuCUGCGCGc -3'
miRNA:   3'- aCC-CGUaGUCGC-GGUGUUU-----------GACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 64498 0.66 0.859938
Target:  5'- cGGGCG-CGG-GCgGCGGGC-GCGCGc -3'
miRNA:   3'- aCCCGUaGUCgCGgUGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 64637 0.69 0.682753
Target:  5'- gGGGCG-CGGCGCCccgcgcaggaaccGCAGGaaggUGCGCGc -3'
miRNA:   3'- aCCCGUaGUCGCGG-------------UGUUUg---ACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 64883 0.67 0.818691
Target:  5'- cGGGag-CAGgGCCGCGAagagcacgcaGCgGCGCGc -3'
miRNA:   3'- aCCCguaGUCgCGGUGUU----------UGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 64939 0.72 0.529856
Target:  5'- cGcGCGUCAGCGCCugGccgcGCUGCGgGc -3'
miRNA:   3'- aCcCGUAGUCGCGGugUu---UGACGCgC- -5'
29429 3' -56.4 NC_006151.1 + 66340 0.66 0.859938
Target:  5'- cUGGGCGacgcgacgCGGCGCUACuacgcggaccucAAGCgcaaGCGCGa -3'
miRNA:   3'- -ACCCGUa-------GUCGCGGUG------------UUUGa---CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 66522 0.68 0.753924
Target:  5'- cGGGCucgCGcGCGCCGCGcucuucgggGGCgcGCGCGg -3'
miRNA:   3'- aCCCGua-GU-CGCGGUGU---------UUGa-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 66862 0.67 0.835766
Target:  5'- aGGGCcggGGCGgCGCGAAggGCGCGc -3'
miRNA:   3'- aCCCGuagUCGCgGUGUUUgaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 67454 0.68 0.753924
Target:  5'- cGGGCGggGGgGUCGCAGAgcGCGCGc -3'
miRNA:   3'- aCCCGUagUCgCGGUGUUUgaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 67486 0.66 0.844023
Target:  5'- cGGGCAcc--CGCaCACGAGC-GCGCGg -3'
miRNA:   3'- aCCCGUagucGCG-GUGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 67724 0.69 0.72433
Target:  5'- -aGGCA-CGGCGCggcgCACAGGCacgGCGCGg -3'
miRNA:   3'- acCCGUaGUCGCG----GUGUUUGa--CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 67843 0.71 0.570305
Target:  5'- gGGGC-UCAGCaGCCcgGCGAGCcgGCGCc -3'
miRNA:   3'- aCCCGuAGUCG-CGG--UGUUUGa-CGCGc -5'
29429 3' -56.4 NC_006151.1 + 68012 0.67 0.835766
Target:  5'- cGGGCucggCGGCGuCCAggucCAGGCggcccgccgGCGCGg -3'
miRNA:   3'- aCCCGua--GUCGC-GGU----GUUUGa--------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 68072 0.67 0.80989
Target:  5'- cGGGCAggucggcgggCAGCGCCuCGAGgCU-CGCGu -3'
miRNA:   3'- aCCCGUa---------GUCGCGGuGUUU-GAcGCGC- -5'
29429 3' -56.4 NC_006151.1 + 68230 0.66 0.860712
Target:  5'- -aGGCG-CAGCGcCCGCGGGCgcgucagguagacgcGCGCGg -3'
miRNA:   3'- acCCGUaGUCGC-GGUGUUUGa--------------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 68277 0.66 0.867583
Target:  5'- cGcGGCGccgGGCGCCACGgcGGCcagGCGCGc -3'
miRNA:   3'- aC-CCGUag-UCGCGGUGU--UUGa--CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 68524 0.66 0.844023
Target:  5'- cGGGCAgcaccacCAGCGCgCGCAggUccCGCGa -3'
miRNA:   3'- aCCCGUa------GUCGCG-GUGUuuGacGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.