miRNA display CGI


Results 21 - 40 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 130598 0.66 0.859938
Target:  5'- aGcGGCAcCAGCGCCuccCAGGCguccugGuCGCGg -3'
miRNA:   3'- aC-CCGUaGUCGCGGu--GUUUGa-----C-GCGC- -5'
29429 3' -56.4 NC_006151.1 + 130521 0.67 0.82732
Target:  5'- cGGGCGcgGGCGUCGCGuacACgcccccGCGCGa -3'
miRNA:   3'- aCCCGUagUCGCGGUGUu--UGa-----CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 130481 0.71 0.601132
Target:  5'- aUGGccugccGCAgcgcgCGGCGCCACAcGCcGCGCGu -3'
miRNA:   3'- -ACC------CGUa----GUCGCGGUGUuUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 130440 0.68 0.753924
Target:  5'- aGGacuGCAgCGGCGCCAgAAACaugGCGUGg -3'
miRNA:   3'- aCC---CGUaGUCGCGGUgUUUGa--CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 130381 0.67 0.800017
Target:  5'- cGcGGCGUCcagcgcgaaggccAGCGCCucgcccGCGAGCgcggGCGCGc -3'
miRNA:   3'- aC-CCGUAG-------------UCGCGG------UGUUUGa---CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 130290 0.68 0.753924
Target:  5'- cGGGCG-C-GCGCCGgCcGACgGCGCGg -3'
miRNA:   3'- aCCCGUaGuCGCGGU-GuUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 129739 0.66 0.852083
Target:  5'- cGGGCccgcgaGGCGCUGCAGcACcaGCGCGa -3'
miRNA:   3'- aCCCGuag---UCGCGGUGUU-UGa-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 128788 0.67 0.791799
Target:  5'- -cGGCcUCGGuCGCCucgGCGAGCgcgGCGCGc -3'
miRNA:   3'- acCCGuAGUC-GCGG---UGUUUGa--CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 128236 0.67 0.813431
Target:  5'- gUGGGCGcCAGguCGCCgaucaggugguggaaGCGGcACUGCGCGc -3'
miRNA:   3'- -ACCCGUaGUC--GCGG---------------UGUU-UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 128044 0.69 0.683778
Target:  5'- cGcGGCAgCGGCGgCAgCGgcGGCUGCGCGg -3'
miRNA:   3'- aC-CCGUaGUCGCgGU-GU--UUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 127471 0.69 0.694005
Target:  5'- cUGGGCGgcgCGGaacgaGCCGCGGACcccGCGCc -3'
miRNA:   3'- -ACCCGUa--GUCg----CGGUGUUUGa--CGCGc -5'
29429 3' -56.4 NC_006151.1 + 127230 0.68 0.763581
Target:  5'- gGGGcCGUCAcacGCGCCAgcuCuuGCgGCGCGa -3'
miRNA:   3'- aCCC-GUAGU---CGCGGU---GuuUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 123039 0.73 0.490504
Target:  5'- gUGGGCGgacCuGCcgGCCGCGGcGCUGCGCGa -3'
miRNA:   3'- -ACCCGUa--GuCG--CGGUGUU-UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 122984 0.72 0.519901
Target:  5'- gGGGCGUCGGCGacgaagACGGGCccgGCGCGc -3'
miRNA:   3'- aCCCGUAGUCGCgg----UGUUUGa--CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 122939 0.67 0.800923
Target:  5'- cGGacGCcgacggCGGCGCCGCGGGggGCGCGg -3'
miRNA:   3'- aCC--CGua----GUCGCGGUGUUUgaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 122661 0.69 0.694005
Target:  5'- aGcGGCGcgAGCGCCGCGccgAGgUGCGCGc -3'
miRNA:   3'- aC-CCGUagUCGCGGUGU---UUgACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 122374 0.73 0.479918
Target:  5'- cGGGC-UCGacgaggcGCGCCGCGGGC-GCGCGc -3'
miRNA:   3'- aCCCGuAGU-------CGCGGUGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 122262 0.65 0.879362
Target:  5'- aGGGCGaggccacgcacaGGCGCCuGCucGGCUGCGUGu -3'
miRNA:   3'- aCCCGUag----------UCGCGG-UGu-UUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 122179 0.67 0.818691
Target:  5'- cGGGCucgUGGUGCCGCcgGAGCUGUaCGa -3'
miRNA:   3'- aCCCGua-GUCGCGGUG--UUUGACGcGC- -5'
29429 3' -56.4 NC_006151.1 + 121991 0.66 0.867583
Target:  5'- aUGGGCggCGcGUGCCGCuuccACgcGCGCGu -3'
miRNA:   3'- -ACCCGuaGU-CGCGGUGuu--UGa-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.