miRNA display CGI


Results 41 - 60 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 121087 0.72 0.529856
Target:  5'- cGGGCggCGGCGCCG--GGCUGCaCGa -3'
miRNA:   3'- aCCCGuaGUCGCGGUguUUGACGcGC- -5'
29429 3' -56.4 NC_006151.1 + 120921 0.66 0.877921
Target:  5'- cUGGGCGUCAGCaaguaccacggcaugGCCGgCAacAACcGCGUc -3'
miRNA:   3'- -ACCCGUAGUCG---------------CGGU-GU--UUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 120320 0.71 0.601132
Target:  5'- cGGGCAgccucUCGGaCGCCGCGcGCgcccGCGUGg -3'
miRNA:   3'- aCCCGU-----AGUC-GCGGUGUuUGa---CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 119963 0.67 0.82732
Target:  5'- cGGGCGcgCuGUGCCcggcgACGAGCUuccugGCGCGg -3'
miRNA:   3'- aCCCGUa-GuCGCGG-----UGUUUGA-----CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 119612 0.75 0.360488
Target:  5'- aUGGGCGUCuucgggaccaugaacAGCGCCuACAgcGACUGCGaCGu -3'
miRNA:   3'- -ACCCGUAG---------------UCGCGG-UGU--UUGACGC-GC- -5'
29429 3' -56.4 NC_006151.1 + 119095 0.67 0.80989
Target:  5'- cGcGGCGcUCGGCGCgUACGugAGCcGCGCGg -3'
miRNA:   3'- aC-CCGU-AGUCGCG-GUGU--UUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 119037 0.7 0.652872
Target:  5'- cGGGCGccaaggacggCGGCGCCGCGGccgccuccGCggGCGCGc -3'
miRNA:   3'- aCCCGUa---------GUCGCGGUGUU--------UGa-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 118450 0.68 0.782528
Target:  5'- cGcGGC-UCGGCcugGCCGCGGAC-GCGCa -3'
miRNA:   3'- aC-CCGuAGUCG---CGGUGUUUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 118154 0.7 0.642524
Target:  5'- cGcGGCggUGGCGCCGCu-GgUGCGCGg -3'
miRNA:   3'- aC-CCGuaGUCGCGGUGuuUgACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 118097 0.67 0.80989
Target:  5'- cGaGGCG-CuGCGCCGCGAccuGCUGgCGCu -3'
miRNA:   3'- aC-CCGUaGuCGCGGUGUU---UGAC-GCGc -5'
29429 3' -56.4 NC_006151.1 + 117787 0.71 0.570305
Target:  5'- cGGGCGg-GGCGCCACGcccGGCgGgGCGg -3'
miRNA:   3'- aCCCGUagUCGCGGUGU---UUGaCgCGC- -5'
29429 3' -56.4 NC_006151.1 + 117663 0.68 0.733297
Target:  5'- gGGGCGUCcaggcaccgcGGCGCgAUGAACUugaacucgcucagGCGCGu -3'
miRNA:   3'- aCCCGUAG----------UCGCGgUGUUUGA-------------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 117588 0.71 0.589794
Target:  5'- aUGGGCcgCguGGCGCCGCcgcaguagaccguGGGCUcGCGCGc -3'
miRNA:   3'- -ACCCGuaG--UCGCGGUG-------------UUUGA-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 117266 0.7 0.652872
Target:  5'- cGGGCcgcgcgCGGcCGCCGCcGACaGCGCGc -3'
miRNA:   3'- aCCCGua----GUC-GCGGUGuUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 117198 0.69 0.682753
Target:  5'- gGGGCGUCguaguaguagacgGGCGCgGCGucGACgacGCGCGc -3'
miRNA:   3'- aCCCGUAG-------------UCGCGgUGU--UUGa--CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 115186 0.72 0.519901
Target:  5'- gGGGCGcUCcagccagcGCGCCGCGGGCgcgcGCGCGa -3'
miRNA:   3'- aCCCGU-AGu-------CGCGGUGUUUGa---CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 115112 0.66 0.859938
Target:  5'- -aGGC--CGGCGCCGCcGGCgacGCGCGc -3'
miRNA:   3'- acCCGuaGUCGCGGUGuUUGa--CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 113539 0.66 0.852083
Target:  5'- cUGGcGCugaugcGCGCCGCGGGCccGCGCGc -3'
miRNA:   3'- -ACC-CGuagu--CGCGGUGUUUGa-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 113021 0.74 0.425187
Target:  5'- cGGGCGacgacgCGuGCGCCGgGuGCUGCGCGg -3'
miRNA:   3'- aCCCGUa-----GU-CGCGGUgUuUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 111857 0.68 0.73131
Target:  5'- gGGGCGcUCGGgGUCGCAGgccgucucgccgucGCUGCaGCGc -3'
miRNA:   3'- aCCCGU-AGUCgCGGUGUU--------------UGACG-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.