miRNA display CGI


Results 61 - 80 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 111250 0.69 0.683778
Target:  5'- aGGGUGUgCAGCagcgagGCCGgGAACcGCGCGg -3'
miRNA:   3'- aCCCGUA-GUCG------CGGUgUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 111047 0.75 0.398822
Target:  5'- cGGGCAg-GGCGCCcuCGAGCgucUGCGCGg -3'
miRNA:   3'- aCCCGUagUCGCGGu-GUUUG---ACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 106728 0.68 0.782528
Target:  5'- cGGGCAugacguUCAcCGUCACGGGCUcgccgccgagcaGCGCGa -3'
miRNA:   3'- aCCCGU------AGUcGCGGUGUUUGA------------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 106471 0.66 0.851286
Target:  5'- gUGGGCGcccUgGGCGCaCACGgagacgggccagcGGCUgGCGCGc -3'
miRNA:   3'- -ACCCGU---AgUCGCG-GUGU-------------UUGA-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 106405 0.73 0.452565
Target:  5'- cGGGCA--GGCGCUguuCAcGCUGCGCGu -3'
miRNA:   3'- aCCCGUagUCGCGGu--GUuUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 106371 0.71 0.580545
Target:  5'- cGGGCGcgCGccCGCCGCGGcgcccGCUGCGCGa -3'
miRNA:   3'- aCCCGUa-GUc-GCGGUGUU-----UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 105727 0.67 0.835766
Target:  5'- cGGcGCcgugCGcGCGCCugAAGCaGCGCGu -3'
miRNA:   3'- aCC-CGua--GU-CGCGGugUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 105532 0.66 0.844023
Target:  5'- cGGcgcGCAUCGG-GCC-CGAGCUGCgGCa -3'
miRNA:   3'- aCC---CGUAGUCgCGGuGUUUGACG-CGc -5'
29429 3' -56.4 NC_006151.1 + 105184 0.71 0.601132
Target:  5'- aGcGCAUCgaGGCGCUGCAGacGCUGCGCc -3'
miRNA:   3'- aCcCGUAG--UCGCGGUGUU--UGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 104864 0.7 0.621812
Target:  5'- cGcGGCGaCGgagcGCGCCACGcgccuGCUGCGCGa -3'
miRNA:   3'- aC-CCGUaGU----CGCGGUGUu----UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 104599 0.66 0.859938
Target:  5'- gGcGGCAgccgCGGCGCCGagaucuGCcGCGCGc -3'
miRNA:   3'- aC-CCGUa---GUCGCGGUguu---UGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 104566 0.67 0.800923
Target:  5'- cUGGGCGcgCGGCG-CGCGGACgUGCuGCa -3'
miRNA:   3'- -ACCCGUa-GUCGCgGUGUUUG-ACG-CGc -5'
29429 3' -56.4 NC_006151.1 + 104032 0.67 0.835766
Target:  5'- gUGGaGCGcgcgCAGCGCCAgcucUggGCgcGCGCGg -3'
miRNA:   3'- -ACC-CGUa---GUCGCGGU----GuuUGa-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 103785 0.71 0.580545
Target:  5'- cGGaGCGcuggCGGCGCUGCAGGCcGCGCu -3'
miRNA:   3'- aCC-CGUa---GUCGCGGUGUUUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 103746 0.72 0.529856
Target:  5'- cGcGGCAgugCGaggagcGCGCCGCGGcGCUGCGCGa -3'
miRNA:   3'- aC-CCGUa--GU------CGCGGUGUU-UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 103665 0.68 0.752952
Target:  5'- -cGGCGgagaaggCGGCGCgCGCGGcggggguGCUGCGCGc -3'
miRNA:   3'- acCCGUa------GUCGCG-GUGUU-------UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 103470 0.67 0.791799
Target:  5'- cGGGCA-CGGUGCuCGCGGcGCUGUgGCGc -3'
miRNA:   3'- aCCCGUaGUCGCG-GUGUU-UGACG-CGC- -5'
29429 3' -56.4 NC_006151.1 + 103302 0.7 0.673508
Target:  5'- cGcGGCucgcgCGGCGCgACGccgAGCUGCGCa -3'
miRNA:   3'- aC-CCGua---GUCGCGgUGU---UUGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 103075 0.68 0.744156
Target:  5'- cGGGCAcCuggAGCGgCGCGAGCUggacacgcucacGCGCGa -3'
miRNA:   3'- aCCCGUaG---UCGCgGUGUUUGA------------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 102684 0.67 0.800923
Target:  5'- gUGGacGCGggGGCGCCcggcGCGGGCgGCGCGg -3'
miRNA:   3'- -ACC--CGUagUCGCGG----UGUUUGaCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.