miRNA display CGI


Results 81 - 100 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 101288 0.76 0.318867
Target:  5'- aGGGCGcgggCGGCGCCGCGcugcACUGCGUc -3'
miRNA:   3'- aCCCGUa---GUCGCGGUGUu---UGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 101243 0.7 0.673508
Target:  5'- gGGGCAUguGCGCCAUcAGCga-GCu -3'
miRNA:   3'- aCCCGUAguCGCGGUGuUUGacgCGc -5'
29429 3' -56.4 NC_006151.1 + 100626 0.79 0.233792
Target:  5'- cUGGGaccugGUCAGCGCCGC--GCUGCGCc -3'
miRNA:   3'- -ACCCg----UAGUCGCGGUGuuUGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 100429 0.69 0.71429
Target:  5'- gGGGCGcugcgCGGCGUgauggCGCAGacgacggaggcGCUGCGCGa -3'
miRNA:   3'- aCCCGUa----GUCGCG-----GUGUU-----------UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 100097 0.67 0.818691
Target:  5'- -cGGCGcCGGCGCCGCccucGCUG-GCGg -3'
miRNA:   3'- acCCGUaGUCGCGGUGuu--UGACgCGC- -5'
29429 3' -56.4 NC_006151.1 + 99617 0.67 0.800923
Target:  5'- cUGGcGCA-CAGCGCCGC-----GCGCGa -3'
miRNA:   3'- -ACC-CGUaGUCGCGGUGuuugaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 99557 0.81 0.1561
Target:  5'- gUGGGCG-CGGCGCgCGCGGcgcuGCUGCGCGa -3'
miRNA:   3'- -ACCCGUaGUCGCG-GUGUU----UGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 99267 0.71 0.56011
Target:  5'- cGGGCuUCAcGCGCCGCc-ACUGCGa- -3'
miRNA:   3'- aCCCGuAGU-CGCGGUGuuUGACGCgc -5'
29429 3' -56.4 NC_006151.1 + 99114 0.66 0.867583
Target:  5'- aGGGCGUgcUGGCGCUGCuGGACcccgggGCGCa -3'
miRNA:   3'- aCCCGUA--GUCGCGGUG-UUUGa-----CGCGc -5'
29429 3' -56.4 NC_006151.1 + 99081 0.7 0.642524
Target:  5'- cGGGCAccgUGGCGCgGCGc-CUGCGCa -3'
miRNA:   3'- aCCCGUa--GUCGCGgUGUuuGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 98987 0.67 0.82732
Target:  5'- gUGGGCgagGUCAaCGCCAC--GCcGCGCa -3'
miRNA:   3'- -ACCCG---UAGUcGCGGUGuuUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 98369 0.68 0.734289
Target:  5'- nGGGCucUgGGCGCgCGC--GCUGCGCc -3'
miRNA:   3'- aCCCGu-AgUCGCG-GUGuuUGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 98341 0.72 0.529856
Target:  5'- cGGGCcgCgAGaCGcCCGCGGGCgUGCGCGg -3'
miRNA:   3'- aCCCGuaG-UC-GC-GGUGUUUG-ACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 97468 0.68 0.753924
Target:  5'- cGGGCAggCGGCucaccGCCACGugGAC-GCGCa -3'
miRNA:   3'- aCCCGUa-GUCG-----CGGUGU--UUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 97276 0.66 0.875742
Target:  5'- cGGGCAgcgccUCGGCggcgggcguguugaGCCggcccgucgggcagcGCGcGCUGCGCGg -3'
miRNA:   3'- aCCCGU-----AGUCG--------------CGG---------------UGUuUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 96631 0.74 0.407494
Target:  5'- aGGGCGcgCAGCGCCuCGAGCUcgGCgGCGa -3'
miRNA:   3'- aCCCGUa-GUCGCGGuGUUUGA--CG-CGC- -5'
29429 3' -56.4 NC_006151.1 + 96047 0.66 0.875011
Target:  5'- gGGGguUCAGCagguagcaGCUggcgaGCGAGCcGCGCGc -3'
miRNA:   3'- aCCCguAGUCG--------CGG-----UGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 94898 1.08 0.002348
Target:  5'- gUGGGCAUCAGCGCCACAAACUGCGCGu -3'
miRNA:   3'- -ACCCGUAGUCGCGGUGUUUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 94735 0.66 0.852083
Target:  5'- -cGGCGUCccGGCGCgCGC--ACUcGCGCGg -3'
miRNA:   3'- acCCGUAG--UCGCG-GUGuuUGA-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 94678 0.7 0.642524
Target:  5'- cGGGCAgcuccccgaaGGCcgcgGCCACGGaccACUGCGCGc -3'
miRNA:   3'- aCCCGUag--------UCG----CGGUGUU---UGACGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.