miRNA display CGI


Results 101 - 120 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 93574 0.67 0.80989
Target:  5'- gGGGCGggcGCGCCaaagaGCGGGCUcGCGCc -3'
miRNA:   3'- aCCCGUaguCGCGG-----UGUUUGA-CGCGc -5'
29429 3' -56.4 NC_006151.1 + 93449 0.66 0.867583
Target:  5'- cGGGgGUCGcCGCCGCGGg--GCGCu -3'
miRNA:   3'- aCCCgUAGUcGCGGUGUUugaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 92193 0.66 0.875011
Target:  5'- gGGGCcgCcgacGCGCCGCcgcGGCcGCGCu -3'
miRNA:   3'- aCCCGuaGu---CGCGGUGu--UUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 91110 0.67 0.816945
Target:  5'- -cGGCcgCGGCGCCcuucgccacggcgGCGAGCUuggccaccuggggGCGCGa -3'
miRNA:   3'- acCCGuaGUCGCGG-------------UGUUUGA-------------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 90973 0.67 0.835766
Target:  5'- --cGCGUCgacgcccuGGCGCCGCuGGCUgGCGCGc -3'
miRNA:   3'- accCGUAG--------UCGCGGUGuUUGA-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 90334 0.69 0.694005
Target:  5'- aUGGGCAggcgCAGCaugGCCAUgAGGCUG-GCGa -3'
miRNA:   3'- -ACCCGUa---GUCG---CGGUG-UUUGACgCGC- -5'
29429 3' -56.4 NC_006151.1 + 90088 0.71 0.611464
Target:  5'- aGGGCccccgCcGCGCCGCAGGCcGCgGCGa -3'
miRNA:   3'- aCCCGua---GuCGCGGUGUUUGaCG-CGC- -5'
29429 3' -56.4 NC_006151.1 + 89244 0.69 0.71429
Target:  5'- uUGGGCGUCgugucgAGCGCCGuCGuggucGACgGCGCc -3'
miRNA:   3'- -ACCCGUAG------UCGCGGU-GU-----UUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 89143 0.71 0.601132
Target:  5'- gGGGCGUCGagaccGCGCCcgccuCGGGCgaggcggGCGCGg -3'
miRNA:   3'- aCCCGUAGU-----CGCGGu----GUUUGa------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 88903 0.66 0.852083
Target:  5'- cGGG-GUCGGCGUCggGCGAGCggaaGCGCc -3'
miRNA:   3'- aCCCgUAGUCGCGG--UGUUUGa---CGCGc -5'
29429 3' -56.4 NC_006151.1 + 88315 0.68 0.734289
Target:  5'- aGGGCcUCggagaAGCGCUGCGAggccacGCUGuCGCGg -3'
miRNA:   3'- aCCCGuAG-----UCGCGGUGUU------UGAC-GCGC- -5'
29429 3' -56.4 NC_006151.1 + 85935 0.7 0.632168
Target:  5'- cUGGGCcugcugcugCAGCaGCCGCAc-CUGCGCa -3'
miRNA:   3'- -ACCCGua-------GUCG-CGGUGUuuGACGCGc -5'
29429 3' -56.4 NC_006151.1 + 85485 0.69 0.704179
Target:  5'- -cGGCGagGacGCGCCGCu-GCUGCGCGc -3'
miRNA:   3'- acCCGUagU--CGCGGUGuuUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 85383 0.68 0.744156
Target:  5'- cGGcGCgaacGUCGGCGCCaACGaggucGACgGCGCGg -3'
miRNA:   3'- aCC-CG----UAGUCGCGG-UGU-----UUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 85165 0.7 0.651837
Target:  5'- gGGGC--CGGCGCCGCGGgcgccgccgccccGCUGgGCa -3'
miRNA:   3'- aCCCGuaGUCGCGGUGUU-------------UGACgCGc -5'
29429 3' -56.4 NC_006151.1 + 85093 0.67 0.80989
Target:  5'- gUGGGCAaccggcacuacUCGGCGCUcgaGAGCgccGCGCu -3'
miRNA:   3'- -ACCCGU-----------AGUCGCGGug-UUUGa--CGCGc -5'
29429 3' -56.4 NC_006151.1 + 85048 0.74 0.434204
Target:  5'- aUGGGCGUgacgaccaCGGCGCUGCAGGcCUGCGgGc -3'
miRNA:   3'- -ACCCGUA--------GUCGCGGUGUUU-GACGCgC- -5'
29429 3' -56.4 NC_006151.1 + 84998 0.67 0.80989
Target:  5'- -aGGUcUCGcGCGCCAUcGACUcGCGCGa -3'
miRNA:   3'- acCCGuAGU-CGCGGUGuUUGA-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 84507 0.67 0.818691
Target:  5'- cGGGCAgCGcGCGCCACuucAUcGCGCc -3'
miRNA:   3'- aCCCGUaGU-CGCGGUGuu-UGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 84137 0.7 0.642524
Target:  5'- cGGGCAgCGGCacgaggggcuguGCCA---GCUGCGCGa -3'
miRNA:   3'- aCCCGUaGUCG------------CGGUguuUGACGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.