Results 81 - 100 of 259 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29429 | 3' | -56.4 | NC_006151.1 | + | 55224 | 0.66 | 0.852083 |
Target: 5'- cGGGCAccaCGGCGCCG---GC-GCGCa -3' miRNA: 3'- aCCCGUa--GUCGCGGUguuUGaCGCGc -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 53266 | 0.66 | 0.852083 |
Target: 5'- cGcGGCA-CAGCuGCCGCGcguGCUcgaaGCGCGa -3' miRNA: 3'- aC-CCGUaGUCG-CGGUGUu--UGA----CGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 83056 | 0.66 | 0.852083 |
Target: 5'- aGcGGCAgCAGCuugGCCACGAGC-GCGUc -3' miRNA: 3'- aC-CCGUaGUCG---CGGUGUUUGaCGCGc -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 106471 | 0.66 | 0.851286 |
Target: 5'- gUGGGCGcccUgGGCGCaCACGgagacgggccagcGGCUgGCGCGc -3' miRNA: 3'- -ACCCGU---AgUCGCG-GUGU-------------UUGA-CGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 141508 | 0.66 | 0.849686 |
Target: 5'- cGGGCGUCuccacgggggccgaGGCGacggacgugaGCGAgcuGCUGCGCGa -3' miRNA: 3'- aCCCGUAG--------------UCGCgg--------UGUU---UGACGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 139938 | 0.66 | 0.847271 |
Target: 5'- gUGGGCcgccguccucgaguUCGGCGCCGagcaguucacccCGGACgggcgGCGCGu -3' miRNA: 3'- -ACCCGu-------------AGUCGCGGU------------GUUUGa----CGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 105532 | 0.66 | 0.844023 |
Target: 5'- cGGcgcGCAUCGG-GCC-CGAGCUGCgGCa -3' miRNA: 3'- aCC---CGUAGUCgCGGuGUUUGACG-CGc -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 69330 | 0.66 | 0.852083 |
Target: 5'- nGGGCG-CGuCGCCGCccGCgaGCGCGg -3' miRNA: 3'- aCCCGUaGUcGCGGUGuuUGa-CGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 139299 | 0.66 | 0.852083 |
Target: 5'- -cGGCGUCuGCGgCGCGuGCUGCuCGa -3' miRNA: 3'- acCCGUAGuCGCgGUGUuUGACGcGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 94735 | 0.66 | 0.852083 |
Target: 5'- -cGGCGUCccGGCGCgCGC--ACUcGCGCGg -3' miRNA: 3'- acCCGUAG--UCGCG-GUGuuUGA-CGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 81373 | 0.66 | 0.859938 |
Target: 5'- cGGGCGcCAGCgcgaGCCGCGccGCgGCGCc -3' miRNA: 3'- aCCCGUaGUCG----CGGUGUu-UGaCGCGc -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 64498 | 0.66 | 0.859938 |
Target: 5'- cGGGCG-CGG-GCgGCGGGC-GCGCGc -3' miRNA: 3'- aCCCGUaGUCgCGgUGUUUGaCGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 54087 | 0.66 | 0.859938 |
Target: 5'- cUGcGGCGgcggCGGCgGCCAUGucGGCUGCGaCGg -3' miRNA: 3'- -AC-CCGUa---GUCG-CGGUGU--UUGACGC-GC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 30902 | 0.66 | 0.859938 |
Target: 5'- cGGaGCGcgcggUAGCGcCCGCGGGCggcccGCGCGg -3' miRNA: 3'- aCC-CGUa----GUCGC-GGUGUUUGa----CGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 130598 | 0.66 | 0.859938 |
Target: 5'- aGcGGCAcCAGCGCCuccCAGGCguccugGuCGCGg -3' miRNA: 3'- aC-CCGUaGUCGCGGu--GUUUGa-----C-GCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 115112 | 0.66 | 0.859938 |
Target: 5'- -aGGC--CGGCGCCGCcGGCgacGCGCGc -3' miRNA: 3'- acCCGuaGUCGCGGUGuUUGa--CGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 104599 | 0.66 | 0.859938 |
Target: 5'- gGcGGCAgccgCGGCGCCGagaucuGCcGCGCGc -3' miRNA: 3'- aC-CCGUa---GUCGCGGUguu---UGaCGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 66340 | 0.66 | 0.859938 |
Target: 5'- cUGGGCGacgcgacgCGGCGCUACuacgcggaccucAAGCgcaaGCGCGa -3' miRNA: 3'- -ACCCGUa-------GUCGCGGUG------------UUUGa---CGCGC- -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 6227 | 0.66 | 0.859938 |
Target: 5'- aGGaGCcgCGGCGCCGgGAgcccugGCUGcCGCc -3' miRNA: 3'- aCC-CGuaGUCGCGGUgUU------UGAC-GCGc -5' |
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29429 | 3' | -56.4 | NC_006151.1 | + | 2212 | 0.66 | 0.859938 |
Target: 5'- gUGGGUcuccaCGGCGCCcCcGGCggcgGCGCGg -3' miRNA: 3'- -ACCCGua---GUCGCGGuGuUUGa---CGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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