miRNA display CGI


Results 41 - 60 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 135804 0.66 0.875011
Target:  5'- cGGGCGagcGCGCCGaggcCGAGCUuuuaGCGCGc -3'
miRNA:   3'- aCCCGUaguCGCGGU----GUUUGA----CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 60917 0.66 0.875011
Target:  5'- cGGGCcaGUC-GCGCCAUggugggcgaguaGAGCUGCcccaGCGu -3'
miRNA:   3'- aCCCG--UAGuCGCGGUG------------UUUGACG----CGC- -5'
29429 3' -56.4 NC_006151.1 + 97276 0.66 0.875742
Target:  5'- cGGGCAgcgccUCGGCggcgggcguguugaGCCggcccgucgggcagcGCGcGCUGCGCGg -3'
miRNA:   3'- aCCCGU-----AGUCG--------------CGG---------------UGUuUGACGCGC- -5'
29429 3' -56.4 NC_006151.1 + 22141 0.66 0.877921
Target:  5'- cGGGUcggagAUCAGCGCCACcaccccgcACggguccuccagcggGCGCGu -3'
miRNA:   3'- aCCCG-----UAGUCGCGGUGuu------UGa-------------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 120921 0.66 0.877921
Target:  5'- cUGGGCGUCAGCaaguaccacggcaugGCCGgCAacAACcGCGUc -3'
miRNA:   3'- -ACCCGUAGUCG---------------CGGU-GU--UUGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 142247 0.66 0.867583
Target:  5'- cGaGGCGUCGGUcaucGCgGCGAGgaGCGCc -3'
miRNA:   3'- aC-CCGUAGUCG----CGgUGUUUgaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 93449 0.66 0.867583
Target:  5'- cGGGgGUCGcCGCCGCGGg--GCGCu -3'
miRNA:   3'- aCCCgUAGUcGCGGUGUUugaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 54087 0.66 0.859938
Target:  5'- cUGcGGCGgcggCGGCgGCCAUGucGGCUGCGaCGg -3'
miRNA:   3'- -AC-CCGUa---GUCG-CGGUGU--UUGACGC-GC- -5'
29429 3' -56.4 NC_006151.1 + 64498 0.66 0.859938
Target:  5'- cGGGCG-CGG-GCgGCGGGC-GCGCGc -3'
miRNA:   3'- aCCCGUaGUCgCGgUGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 81373 0.66 0.859938
Target:  5'- cGGGCGcCAGCgcgaGCCGCGccGCgGCGCc -3'
miRNA:   3'- aCCCGUaGUCG----CGGUGUu-UGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 56567 0.66 0.859938
Target:  5'- cGGGCGaC-GCGCCGCcgcccgacGGGCUgGUGCGg -3'
miRNA:   3'- aCCCGUaGuCGCGGUG--------UUUGA-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 138730 0.66 0.859938
Target:  5'- cGGGUcguGUaCGcGCGCCGCG-ACUGcCGCGc -3'
miRNA:   3'- aCCCG---UA-GU-CGCGGUGUuUGAC-GCGC- -5'
29429 3' -56.4 NC_006151.1 + 68230 0.66 0.860712
Target:  5'- -aGGCG-CAGCGcCCGCGGGCgcgucagguagacgcGCGCGg -3'
miRNA:   3'- acCCGUaGUCGC-GGUGUUUGa--------------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 51272 0.66 0.863022
Target:  5'- aGGGCAUCacgagcgcgcccucgGGgGCCGCcGGCcagguccGCGCGa -3'
miRNA:   3'- aCCCGUAG---------------UCgCGGUGuUUGa------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 49037 0.66 0.863022
Target:  5'- cGGGCca-GGC-CCACGGGCUggccuucagcguccgGCGCGg -3'
miRNA:   3'- aCCCGuagUCGcGGUGUUUGA---------------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 4215 0.66 0.867583
Target:  5'- aGGGCGgcCGGgG-CGCGGGCggGCGCGg -3'
miRNA:   3'- aCCCGUa-GUCgCgGUGUUUGa-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 68277 0.66 0.867583
Target:  5'- cGcGGCGccgGGCGCCACGgcGGCcagGCGCGc -3'
miRNA:   3'- aC-CCGUag-UCGCGGUGU--UUGa--CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 99114 0.66 0.867583
Target:  5'- aGGGCGUgcUGGCGCUGCuGGACcccgggGCGCa -3'
miRNA:   3'- aCCCGUA--GUCGCGGUG-UUUGa-----CGCGc -5'
29429 3' -56.4 NC_006151.1 + 121991 0.66 0.867583
Target:  5'- aUGGGCggCGcGUGCCGCuuccACgcGCGCGu -3'
miRNA:   3'- -ACCCGuaGU-CGCGGUGuu--UGa-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 4340 0.66 0.867583
Target:  5'- gGcGGCGaaGGCGgCGCGGACgcggGCGCa -3'
miRNA:   3'- aC-CCGUagUCGCgGUGUUUGa---CGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.