miRNA display CGI


Results 21 - 40 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 3' -56.4 NC_006151.1 + 142247 0.66 0.867583
Target:  5'- cGaGGCGUCGGUcaucGCgGCGAGgaGCGCc -3'
miRNA:   3'- aC-CCGUAGUCG----CGgUGUUUgaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 49037 0.66 0.863022
Target:  5'- cGGGCca-GGC-CCACGGGCUggccuucagcguccgGCGCGg -3'
miRNA:   3'- aCCCGuagUCGcGGUGUUUGA---------------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 51272 0.66 0.863022
Target:  5'- aGGGCAUCacgagcgcgcccucgGGgGCCGCcGGCcagguccGCGCGa -3'
miRNA:   3'- aCCCGUAG---------------UCgCGGUGuUUGa------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 68230 0.66 0.860712
Target:  5'- -aGGCG-CAGCGcCCGCGGGCgcgucagguagacgcGCGCGg -3'
miRNA:   3'- acCCGUaGUCGC-GGUGUUUGa--------------CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 115112 0.66 0.859938
Target:  5'- -aGGC--CGGCGCCGCcGGCgacGCGCGc -3'
miRNA:   3'- acCCGuaGUCGCGGUGuUUGa--CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 104599 0.66 0.859938
Target:  5'- gGcGGCAgccgCGGCGCCGagaucuGCcGCGCGc -3'
miRNA:   3'- aC-CCGUa---GUCGCGGUguu---UGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 66340 0.66 0.859938
Target:  5'- cUGGGCGacgcgacgCGGCGCUACuacgcggaccucAAGCgcaaGCGCGa -3'
miRNA:   3'- -ACCCGUa-------GUCGCGGUG------------UUUGa---CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 6227 0.66 0.859938
Target:  5'- aGGaGCcgCGGCGCCGgGAgcccugGCUGcCGCc -3'
miRNA:   3'- aCC-CGuaGUCGCGGUgUU------UGAC-GCGc -5'
29429 3' -56.4 NC_006151.1 + 2212 0.66 0.859938
Target:  5'- gUGGGUcuccaCGGCGCCcCcGGCggcgGCGCGg -3'
miRNA:   3'- -ACCCGua---GUCGCGGuGuUUGa---CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 130598 0.66 0.859938
Target:  5'- aGcGGCAcCAGCGCCuccCAGGCguccugGuCGCGg -3'
miRNA:   3'- aC-CCGUaGUCGCGGu--GUUUGa-----C-GCGC- -5'
29429 3' -56.4 NC_006151.1 + 30902 0.66 0.859938
Target:  5'- cGGaGCGcgcggUAGCGcCCGCGGGCggcccGCGCGg -3'
miRNA:   3'- aCC-CGUa----GUCGC-GGUGUUUGa----CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 138730 0.66 0.859938
Target:  5'- cGGGUcguGUaCGcGCGCCGCG-ACUGcCGCGc -3'
miRNA:   3'- aCCCG---UA-GU-CGCGGUGUuUGAC-GCGC- -5'
29429 3' -56.4 NC_006151.1 + 56567 0.66 0.859938
Target:  5'- cGGGCGaC-GCGCCGCcgcccgacGGGCUgGUGCGg -3'
miRNA:   3'- aCCCGUaGuCGCGGUG--------UUUGA-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 81373 0.66 0.859938
Target:  5'- cGGGCGcCAGCgcgaGCCGCGccGCgGCGCc -3'
miRNA:   3'- aCCCGUaGUCG----CGGUGUu-UGaCGCGc -5'
29429 3' -56.4 NC_006151.1 + 64498 0.66 0.859938
Target:  5'- cGGGCG-CGG-GCgGCGGGC-GCGCGc -3'
miRNA:   3'- aCCCGUaGUCgCGgUGUUUGaCGCGC- -5'
29429 3' -56.4 NC_006151.1 + 54087 0.66 0.859938
Target:  5'- cUGcGGCGgcggCGGCgGCCAUGucGGCUGCGaCGg -3'
miRNA:   3'- -AC-CCGUa---GUCG-CGGUGU--UUGACGC-GC- -5'
29429 3' -56.4 NC_006151.1 + 139299 0.66 0.852083
Target:  5'- -cGGCGUCuGCGgCGCGuGCUGCuCGa -3'
miRNA:   3'- acCCGUAGuCGCgGUGUuUGACGcGC- -5'
29429 3' -56.4 NC_006151.1 + 69330 0.66 0.852083
Target:  5'- nGGGCG-CGuCGCCGCccGCgaGCGCGg -3'
miRNA:   3'- aCCCGUaGUcGCGGUGuuUGa-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 129739 0.66 0.852083
Target:  5'- cGGGCccgcgaGGCGCUGCAGcACcaGCGCGa -3'
miRNA:   3'- aCCCGuag---UCGCGGUGUU-UGa-CGCGC- -5'
29429 3' -56.4 NC_006151.1 + 113539 0.66 0.852083
Target:  5'- cUGGcGCugaugcGCGCCGCGGGCccGCGCGc -3'
miRNA:   3'- -ACC-CGuagu--CGCGGUGUUUGa-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.