miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 45423 0.66 0.713196
Target:  5'- uGuuGUGggCCGgGGguucGCGGGCGuCGCAc -3'
miRNA:   3'- -CggCACgaGGCgCUa---CGCCUGC-GCGU- -5'
29429 5' -60.5 NC_006151.1 + 114135 0.66 0.713196
Target:  5'- cGCCGccGCcgagCCGCGGcuCGGGCGCaGCGa -3'
miRNA:   3'- -CGGCa-CGa---GGCGCUacGCCUGCG-CGU- -5'
29429 5' -60.5 NC_006151.1 + 136594 0.66 0.713196
Target:  5'- cGCgCG-GCUCCGCGA-GCaccuGGACGC-CGu -3'
miRNA:   3'- -CG-GCaCGAGGCGCUaCG----CCUGCGcGU- -5'
29429 5' -60.5 NC_006151.1 + 101652 0.66 0.713196
Target:  5'- cGCCGUGC-CCGCGcucuacggcGUGGGCGagaCGUAc -3'
miRNA:   3'- -CGGCACGaGGCGCua-------CGCCUGC---GCGU- -5'
29429 5' -60.5 NC_006151.1 + 102680 0.66 0.713196
Target:  5'- cGCCGUGga-CGCGGgggcgcccggcGCGGGCgGCGCGg -3'
miRNA:   3'- -CGGCACgagGCGCUa----------CGCCUG-CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 102918 0.66 0.713196
Target:  5'- cGCUG-GCggCCGcCGAggaGCGGcuGCGCGCGc -3'
miRNA:   3'- -CGGCaCGa-GGC-GCUa--CGCC--UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 106881 0.66 0.713196
Target:  5'- gGCCGUgacGCUgUGCGAccUGCGcGAcccCGCGCu -3'
miRNA:   3'- -CGGCA---CGAgGCGCU--ACGC-CU---GCGCGu -5'
29429 5' -60.5 NC_006151.1 + 138609 0.66 0.713196
Target:  5'- cGCUGccGCUCgGCGAggacgccgccGgGGGCGCGCc -3'
miRNA:   3'- -CGGCa-CGAGgCGCUa---------CgCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 17385 0.66 0.721872
Target:  5'- aCCGUG-UCCGCacgacggGgcGCGuGGCGCGCGg -3'
miRNA:   3'- cGGCACgAGGCG-------CuaCGC-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 75966 0.66 0.722833
Target:  5'- cGCuCGUGCUUCGUGAggaagaagGUGucguCGCGCAc -3'
miRNA:   3'- -CG-GCACGAGGCGCUa-------CGCcu--GCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 4603 0.66 0.722833
Target:  5'- aGCCGUGg-CCGUGGggcgcGUGGACccgGCGCu -3'
miRNA:   3'- -CGGCACgaGGCGCUa----CGCCUG---CGCGu -5'
29429 5' -60.5 NC_006151.1 + 103821 0.67 0.664204
Target:  5'- gGCCGUGgCggcggCCGUGGagaugcucggGCGGcugcGCGCGCAg -3'
miRNA:   3'- -CGGCAC-Ga----GGCGCUa---------CGCC----UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 137269 0.67 0.664204
Target:  5'- cGCCcgGUGC-CCGCGGgcacgcucgagGCGGccAUGCGCGg -3'
miRNA:   3'- -CGG--CACGaGGCGCUa----------CGCC--UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 24597 0.67 0.664204
Target:  5'- cGCCuUGacgUCGCGAUGCauGAUGCGCAu -3'
miRNA:   3'- -CGGcACga-GGCGCUACGc-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 89884 0.67 0.664204
Target:  5'- cGCCGcucggGCUCgGCGGUGgGGuCG-GCGu -3'
miRNA:   3'- -CGGCa----CGAGgCGCUACgCCuGCgCGU- -5'
29429 5' -60.5 NC_006151.1 + 92735 0.67 0.664204
Target:  5'- gGCCaUGCUCaCGcCGgcGCGGcACGgGCAc -3'
miRNA:   3'- -CGGcACGAG-GC-GCuaCGCC-UGCgCGU- -5'
29429 5' -60.5 NC_006151.1 + 22990 0.67 0.674084
Target:  5'- gGUCGUGaucucggCCGCGcggGUGGGgGCGCGg -3'
miRNA:   3'- -CGGCACga-----GGCGCua-CGCCUgCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 130669 0.67 0.674084
Target:  5'- cGUCaGUGC-CCGCGggGCGcGGCGCa-- -3'
miRNA:   3'- -CGG-CACGaGGCGCuaCGC-CUGCGcgu -5'
29429 5' -60.5 NC_006151.1 + 89054 0.67 0.674084
Target:  5'- cCCGUGCgcgguggCCuuguCGccGUGGACGCGCGu -3'
miRNA:   3'- cGGCACGa------GGc---GCuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 59502 0.67 0.654301
Target:  5'- cCCGgcgGcCUCCGCGAcGC--GCGCGCAg -3'
miRNA:   3'- cGGCa--C-GAGGCGCUaCGccUGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.