miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 58333 0.67 0.624521
Target:  5'- cGCCG-GcCUCCGCGuagGC--GCGCGCGa -3'
miRNA:   3'- -CGGCaC-GAGGCGCua-CGccUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 51095 0.67 0.624521
Target:  5'- cGCCccuCUCCGCcucucacuccagGAUGCGGGCcucGCGCAg -3'
miRNA:   3'- -CGGcacGAGGCG------------CUACGCCUG---CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 2343 0.67 0.624521
Target:  5'- cGUCGgGCUCCagcaGCGccGCGGcgcagaagGCGCGCAa -3'
miRNA:   3'- -CGGCaCGAGG----CGCuaCGCC--------UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 138732 0.67 0.621542
Target:  5'- gGUCGUGUacgcgcgCCGCGAcUGCcgcgccuaccugugGGACGUGCAc -3'
miRNA:   3'- -CGGCACGa------GGCGCU-ACG--------------CCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 113286 0.67 0.652318
Target:  5'- cGCCGcggcguacgcgcGCUaCCGCGcgGUGGACGC-CAc -3'
miRNA:   3'- -CGGCa-----------CGA-GGCGCuaCGCCUGCGcGU- -5'
29429 5' -60.5 NC_006151.1 + 4801 0.67 0.654301
Target:  5'- cGCgGUaGCgggCCGCGGccugGCGGACGuCGUc -3'
miRNA:   3'- -CGgCA-CGa--GGCGCUa---CGCCUGC-GCGu -5'
29429 5' -60.5 NC_006151.1 + 89724 0.67 0.674084
Target:  5'- cGCCGgccGCggCCGCGGUgGUGGGCGagacgaGCu -3'
miRNA:   3'- -CGGCa--CGa-GGCGCUA-CGCCUGCg-----CGu -5'
29429 5' -60.5 NC_006151.1 + 89054 0.67 0.674084
Target:  5'- cCCGUGCgcgguggCCuuguCGccGUGGACGCGCGu -3'
miRNA:   3'- cGGCACGa------GGc---GCuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 130669 0.67 0.674084
Target:  5'- cGUCaGUGC-CCGCGggGCGcGGCGCa-- -3'
miRNA:   3'- -CGG-CACGaGGCGCuaCGC-CUGCGcgu -5'
29429 5' -60.5 NC_006151.1 + 22990 0.67 0.674084
Target:  5'- gGUCGUGaucucggCCGCGcggGUGGGgGCGCGg -3'
miRNA:   3'- -CGGCACga-----GGCGCua-CGCCUgCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 92735 0.67 0.664204
Target:  5'- gGCCaUGCUCaCGcCGgcGCGGcACGgGCAc -3'
miRNA:   3'- -CGGcACGAG-GC-GCuaCGCC-UGCgCGU- -5'
29429 5' -60.5 NC_006151.1 + 89884 0.67 0.664204
Target:  5'- cGCCGcucggGCUCgGCGGUGgGGuCG-GCGu -3'
miRNA:   3'- -CGGCa----CGAGgCGCUACgCCuGCgCGU- -5'
29429 5' -60.5 NC_006151.1 + 24597 0.67 0.664204
Target:  5'- cGCCuUGacgUCGCGAUGCauGAUGCGCAu -3'
miRNA:   3'- -CGGcACga-GGCGCUACGc-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 137269 0.67 0.664204
Target:  5'- cGCCcgGUGC-CCGCGGgcacgcucgagGCGGccAUGCGCGg -3'
miRNA:   3'- -CGG--CACGaGGCGCUa----------CGCC--UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 103821 0.67 0.664204
Target:  5'- gGCCGUGgCggcggCCGUGGagaugcucggGCGGcugcGCGCGCAg -3'
miRNA:   3'- -CGGCAC-Ga----GGCGCUa---------CGCC----UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 59502 0.67 0.654301
Target:  5'- cCCGgcgGcCUCCGCGAcGC--GCGCGCAg -3'
miRNA:   3'- cGGCa--C-GAGGCGCUaCGccUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 119746 0.67 0.654301
Target:  5'- cGCCGUGgaCCgGCucugGCGGACGUGg- -3'
miRNA:   3'- -CGGCACgaGG-CGcua-CGCCUGCGCgu -5'
29429 5' -60.5 NC_006151.1 + 130111 0.67 0.654301
Target:  5'- gGCCGUGaagcCCGgGuucuggccGUGGGCGCGCGc -3'
miRNA:   3'- -CGGCACga--GGCgCua------CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 49621 0.67 0.654301
Target:  5'- gGCgGUGCUgCGCGAguggggGUGGGC-CGUg -3'
miRNA:   3'- -CGgCACGAgGCGCUa-----CGCCUGcGCGu -5'
29429 5' -60.5 NC_006151.1 + 120794 0.68 0.614596
Target:  5'- gGCCGacgcggaGCgcgCCGCGcgcgagGUGCuGGACGCGCc -3'
miRNA:   3'- -CGGCa------CGa--GGCGC------UACG-CCUGCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.