miRNA display CGI


Results 81 - 100 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 64619 0.68 0.604683
Target:  5'- cGCCGcGCcgccggCCGCGGggcGCGGcgcccCGCGCAg -3'
miRNA:   3'- -CGGCaCGa-----GGCGCUa--CGCCu----GCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 51416 0.68 0.604683
Target:  5'- aGCgCGUGCacccgUCCGUGGccaugacGCGGACGcCGCGc -3'
miRNA:   3'- -CG-GCACG-----AGGCGCUa------CGCCUGC-GCGU- -5'
29429 5' -60.5 NC_006151.1 + 7976 0.68 0.604683
Target:  5'- gGCuCGUGUguccuUCCGCGGUaccuCGGGCGgGCGg -3'
miRNA:   3'- -CG-GCACG-----AGGCGCUAc---GCCUGCgCGU- -5'
29429 5' -60.5 NC_006151.1 + 138421 0.68 0.604683
Target:  5'- aGCaGUGCUUCGCuacaaaGUGCGGcagcaacgcgACGCGCAc -3'
miRNA:   3'- -CGgCACGAGGCGc-----UACGCC----------UGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 102235 0.68 0.603692
Target:  5'- cGCCGUGCgccgucgCCGCGcucuucgaGCccauccuGGGCGCGCu -3'
miRNA:   3'- -CGGCACGa------GGCGCua------CG-------CCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 77588 0.68 0.601712
Target:  5'- gGCUGcUGCUgCCGCuGAcggagcuggaccucUGCGGcCGCGCGg -3'
miRNA:   3'- -CGGC-ACGA-GGCG-CU--------------ACGCCuGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 40221 0.68 0.598744
Target:  5'- cGCCGgcaaccccuaccugcUGCUCCGCuGA-GCGGG-GCGCc -3'
miRNA:   3'- -CGGC---------------ACGAGGCG-CUaCGCCUgCGCGu -5'
29429 5' -60.5 NC_006151.1 + 55044 0.68 0.594789
Target:  5'- cGCCGUggagaagauGCUCgGCGAggacccgGCGGGCucggccgcgGCGCGc -3'
miRNA:   3'- -CGGCA---------CGAGgCGCUa------CGCCUG---------CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 127990 0.68 0.604683
Target:  5'- uGCgGcgGCUCCGCGucGCGGuCGCGgGg -3'
miRNA:   3'- -CGgCa-CGAGGCGCuaCGCCuGCGCgU- -5'
29429 5' -60.5 NC_006151.1 + 5074 0.68 0.604683
Target:  5'- gGCCGaGggCCGCGGggccgcgGCGGGCGCcgGCGg -3'
miRNA:   3'- -CGGCaCgaGGCGCUa------CGCCUGCG--CGU- -5'
29429 5' -60.5 NC_006151.1 + 93552 0.68 0.604683
Target:  5'- cGCCaUGggaaaguccgCCGCGGggGCGGGCGCGCc -3'
miRNA:   3'- -CGGcACga--------GGCGCUa-CGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 120794 0.68 0.614596
Target:  5'- gGCCGacgcggaGCgcgCCGCGcgcgagGUGCuGGACGCGCc -3'
miRNA:   3'- -CGGCa------CGa--GGCGC------UACG-CCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 100686 0.68 0.614596
Target:  5'- cGUCGcgacGCUCCGCGAgaccuggacCGaGGCGCGCGa -3'
miRNA:   3'- -CGGCa---CGAGGCGCUac-------GC-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 127311 0.68 0.614596
Target:  5'- gGCCGUcguccgcgcgGgUCCGCGG-GCGGGgGUGCu -3'
miRNA:   3'- -CGGCA----------CgAGGCGCUaCGCCUgCGCGu -5'
29429 5' -60.5 NC_006151.1 + 56287 0.68 0.614596
Target:  5'- aCC-UGCcCCGCGGcggagGCGGACGcCGCGc -3'
miRNA:   3'- cGGcACGaGGCGCUa----CGCCUGC-GCGU- -5'
29429 5' -60.5 NC_006151.1 + 21351 0.68 0.614596
Target:  5'- gGCUGgaacgGCUCCGCGGgcUGCGGccACcCGCu -3'
miRNA:   3'- -CGGCa----CGAGGCGCU--ACGCC--UGcGCGu -5'
29429 5' -60.5 NC_006151.1 + 19728 0.68 0.614596
Target:  5'- aGCCGaaGC-CCGCGcgGCGGuCGuCGCc -3'
miRNA:   3'- -CGGCa-CGaGGCGCuaCGCCuGC-GCGu -5'
29429 5' -60.5 NC_006151.1 + 78699 0.68 0.613604
Target:  5'- gGCCGggGCcucgucgCCGCGAcgGCgcccgugGGGCGCGCGc -3'
miRNA:   3'- -CGGCa-CGa------GGCGCUa-CG-------CCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 96579 0.68 0.604683
Target:  5'- cGCCGccucGCggCGCGAggcgccgggcGCGGGCGCGCc -3'
miRNA:   3'- -CGGCa---CGagGCGCUa---------CGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 78503 0.68 0.594789
Target:  5'- cGCCGUGgUgcacgcccCCGCGAUcGCGGACccgGCGgGg -3'
miRNA:   3'- -CGGCACgA--------GGCGCUA-CGCCUG---CGCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.