miRNA display CGI


Results 61 - 80 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 99975 0.7 0.498234
Target:  5'- cGCCGcGCUCgugGCGgcGCuGGCGCGCGa -3'
miRNA:   3'- -CGGCaCGAGg--CGCuaCGcCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 55458 0.7 0.452582
Target:  5'- cGCCG-GCcCCGCcg-GgGGGCGCGCGc -3'
miRNA:   3'- -CGGCaCGaGGCGcuaCgCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 20311 0.7 0.452582
Target:  5'- cGCCGUgGCguuggcggCgGCGA-GCaGGACGCGCGa -3'
miRNA:   3'- -CGGCA-CGa-------GgCGCUaCG-CCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 130266 0.7 0.488932
Target:  5'- gGCCGgcgcGCggCCcCGAggccGCGGGCGCGCGc -3'
miRNA:   3'- -CGGCa---CGa-GGcGCUa---CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 106516 0.7 0.48339
Target:  5'- cGCCGUGCcgggCGCGcuggccaccuucaccGUGCuGGCGCGCAu -3'
miRNA:   3'- -CGGCACGag--GCGC---------------UACGcCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 130924 0.7 0.478795
Target:  5'- gGCCGgGC-CCGCGGggGCGGGggcggcgggggguCGCGCGg -3'
miRNA:   3'- -CGGCaCGaGGCGCUa-CGCCU-------------GCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 67281 0.7 0.470579
Target:  5'- cGCC-UGCgCCGCuGGUGcCGcGACGCGCGc -3'
miRNA:   3'- -CGGcACGaGGCG-CUAC-GC-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 112944 0.7 0.46967
Target:  5'- gGCCGcgacGCg-CGCGAUguuuuucaccgugGCGGACGCGCGc -3'
miRNA:   3'- -CGGCa---CGagGCGCUA-------------CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 123228 0.7 0.461534
Target:  5'- cGCCGgGUUCCGCGca-CGG-CGCGCGu -3'
miRNA:   3'- -CGGCaCGAGGCGCuacGCCuGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 118448 0.7 0.461534
Target:  5'- cGCgCG-GCUCgGCcugGccGCGGACGCGCAc -3'
miRNA:   3'- -CG-GCaCGAGgCG---CuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 98633 0.7 0.452582
Target:  5'- cGCCGc-CUUCGaCGAggcccugGCGGGCGCGCGc -3'
miRNA:   3'- -CGGCacGAGGC-GCUa------CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 90678 0.7 0.452582
Target:  5'- gGCCGcuUGUcccCCGCGGcgggggcgGCGGACGCGCc -3'
miRNA:   3'- -CGGC--ACGa--GGCGCUa-------CGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 139643 0.69 0.526591
Target:  5'- cGCCG-GCgcgggggUCGCG--GCGGGCGCGCc -3'
miRNA:   3'- -CGGCaCGa------GGCGCuaCGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 84620 0.69 0.530419
Target:  5'- cGCCGcGCggccgCCGCGGcgcuggacaacgccaUggccGCGGGCGCGCGc -3'
miRNA:   3'- -CGGCaCGa----GGCGCU---------------A----CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 86324 0.69 0.545829
Target:  5'- gGCCGUGCUcgcCCGCGccGUGGGCcCGg- -3'
miRNA:   3'- -CGGCACGA---GGCGCuaCGCCUGcGCgu -5'
29429 5' -60.5 NC_006151.1 + 52380 0.69 0.545829
Target:  5'- cCCGggGC-CCGCGGgggcgGCGGGCGcCGCc -3'
miRNA:   3'- cGGCa-CGaGGCGCUa----CGCCUGC-GCGu -5'
29429 5' -60.5 NC_006151.1 + 137934 0.69 0.555533
Target:  5'- cGCC-UGCUCCcCuuUGgGGACGCGCc -3'
miRNA:   3'- -CGGcACGAGGcGcuACgCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 84356 0.69 0.526591
Target:  5'- cGCCGgcccgcgGCggugaUCGCGAUcGCGG-CGCGCGg -3'
miRNA:   3'- -CGGCa------CGa----GGCGCUA-CGCCuGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 98019 0.69 0.53618
Target:  5'- cGCCGgccaGgUCCGCGggGUGGcGCaGCGCGa -3'
miRNA:   3'- -CGGCa---CgAGGCGCuaCGCC-UG-CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 65779 0.69 0.544862
Target:  5'- cGCCG-GCggCgGCGAUggcgccgcccggcGCGGACGUGCc -3'
miRNA:   3'- -CGGCaCGa-GgCGCUA-------------CGCCUGCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.