Results 81 - 100 of 215 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29429 | 5' | -60.5 | NC_006151.1 | + | 98019 | 0.69 | 0.53618 |
Target: 5'- cGCCGgccaGgUCCGCGggGUGGcGCaGCGCGa -3' miRNA: 3'- -CGGCa---CgAGGCGCuaCGCC-UG-CGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 113104 | 0.69 | 0.555533 |
Target: 5'- aCCGgggGCggggCCGCGGacGCGGACGcCGCc -3' miRNA: 3'- cGGCa--CGa---GGCGCUa-CGCCUGC-GCGu -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 97459 | 0.69 | 0.520869 |
Target: 5'- cGCCGaGCUcgggcaggcggcucaCCGCcacGUGGACGCGCAg -3' miRNA: 3'- -CGGCaCGA---------------GGCGcuaCGCCUGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 136092 | 0.69 | 0.555533 |
Target: 5'- cGCUGcGCUCCaucGCGGU-CGGGCGcCGCGg -3' miRNA: 3'- -CGGCaCGAGG---CGCUAcGCCUGC-GCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 100877 | 0.69 | 0.522774 |
Target: 5'- cGCCGUGaaccuggaggugCUGCGccGCGGcGCGCGCGc -3' miRNA: 3'- -CGGCACga----------GGCGCuaCGCC-UGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 92666 | 0.69 | 0.507614 |
Target: 5'- cGCCcUGCUgCCgGCGGccGgGGACGCGCGc -3' miRNA: 3'- -CGGcACGA-GG-CGCUa-CgCCUGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 55902 | 0.69 | 0.553588 |
Target: 5'- cGCCGggcgaccgagcgGCUCCGCGAUGgaggccgugaUGGACGaGCu -3' miRNA: 3'- -CGGCa-----------CGAGGCGCUAC----------GCCUGCgCGu -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 47751 | 0.69 | 0.507614 |
Target: 5'- aGCCG-GaCUUugCGCGAUGCGGcgauCGCGCc -3' miRNA: 3'- -CGGCaC-GAG--GCGCUACGCCu---GCGCGu -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 132092 | 0.69 | 0.507614 |
Target: 5'- cGCCGUcCUCCuCGAUGaGGccgGCGCGCAc -3' miRNA: 3'- -CGGCAcGAGGcGCUACgCC---UGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 39862 | 0.69 | 0.516119 |
Target: 5'- cGCCGaGCUCCGCGGccccgagggccUGCcGGccgaguuGCGCGCc -3' miRNA: 3'- -CGGCaCGAGGCGCU-----------ACG-CC-------UGCGCGu -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 54604 | 0.69 | 0.517068 |
Target: 5'- cGgCGUGgUCC-CGGUGCgccGGGCGCGCc -3' miRNA: 3'- -CgGCACgAGGcGCUACG---CCUGCGCGu -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 133643 | 0.69 | 0.526591 |
Target: 5'- gGCgGUGgUCCG-GGUGCGaGAgGCGCu -3' miRNA: 3'- -CGgCACgAGGCgCUACGC-CUgCGCGu -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 106327 | 0.69 | 0.526591 |
Target: 5'- cGCgGUGCUggaccgcgcgcuggaCGCGGUggacacgcuggacGCGGGCGCGCGc -3' miRNA: 3'- -CGgCACGAg--------------GCGCUA-------------CGCCUGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 84356 | 0.69 | 0.526591 |
Target: 5'- cGCCGgcccgcgGCggugaUCGCGAUcGCGG-CGCGCGg -3' miRNA: 3'- -CGGCa------CGa----GGCGCUA-CGCCuGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 139643 | 0.69 | 0.526591 |
Target: 5'- cGCCG-GCgcgggggUCGCG--GCGGGCGCGCc -3' miRNA: 3'- -CGGCaCGa------GGCGCuaCGCCUGCGCGu -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 65779 | 0.69 | 0.544862 |
Target: 5'- cGCCG-GCggCgGCGAUggcgccgcccggcGCGGACGUGCc -3' miRNA: 3'- -CGGCaCGa-GgCGCUA-------------CGCCUGCGCGu -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 86324 | 0.69 | 0.545829 |
Target: 5'- gGCCGUGCUcgcCCGCGccGUGGGCcCGg- -3' miRNA: 3'- -CGGCACGA---GGCGCuaCGCCUGcGCgu -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 82995 | 0.69 | 0.545829 |
Target: 5'- cGCCGccacggCCGCGgcGCaGACGCGCGg -3' miRNA: 3'- -CGGCacga--GGCGCuaCGcCUGCGCGU- -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 40221 | 0.68 | 0.598744 |
Target: 5'- cGCCGgcaaccccuaccugcUGCUCCGCuGA-GCGGG-GCGCc -3' miRNA: 3'- -CGGC---------------ACGAGGCG-CUaCGCCUgCGCGu -5' |
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29429 | 5' | -60.5 | NC_006151.1 | + | 55044 | 0.68 | 0.594789 |
Target: 5'- cGCCGUggagaagauGCUCgGCGAggacccgGCGGGCucggccgcgGCGCGc -3' miRNA: 3'- -CGGCA---------CGAGgCGCUa------CGCCUG---------CGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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