miRNA display CGI


Results 41 - 60 of 215 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29429 5' -60.5 NC_006151.1 + 71016 0.72 0.376603
Target:  5'- cGCCaUGCgCCGCGAgcucGCGGAgcUGCGCGc -3'
miRNA:   3'- -CGGcACGaGGCGCUa---CGCCU--GCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 39466 0.72 0.389473
Target:  5'- cGCCGUGCgcuggcccgggugCCGCGAgcuccgcGCGGcCGUGCu -3'
miRNA:   3'- -CGGCACGa------------GGCGCUa------CGCCuGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 122943 0.72 0.392735
Target:  5'- cGCCGacgGCggcgCCGCGGggggcGCGGACGCcgGCGa -3'
miRNA:   3'- -CGGCa--CGa---GGCGCUa----CGCCUGCG--CGU- -5'
29429 5' -60.5 NC_006151.1 + 102782 0.71 0.400967
Target:  5'- gGUCGgcgacGcCUCCGCGAguacuuucUGCGcGGCGCGCAg -3'
miRNA:   3'- -CGGCa----C-GAGGCGCU--------ACGC-CUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 139267 0.71 0.400967
Target:  5'- cCCGcgcGCUCCGacg-GCGGACGCGCc -3'
miRNA:   3'- cGGCa--CGAGGCgcuaCGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 61437 0.71 0.409308
Target:  5'- cGCCGcgGCgcccgcCCGCGuccgccgccauGUGCGGGCcGCGCAa -3'
miRNA:   3'- -CGGCa-CGa-----GGCGC-----------UACGCCUG-CGCGU- -5'
29429 5' -60.5 NC_006151.1 + 77089 0.71 0.409308
Target:  5'- -aCGUGCgagCUgaagcgcggGCGcgGCGGGCGCGCGc -3'
miRNA:   3'- cgGCACGa--GG---------CGCuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 113630 0.71 0.409308
Target:  5'- cGCgCGUGCUCUuugaGCGcgGCG-ACGCGCu -3'
miRNA:   3'- -CG-GCACGAGG----CGCuaCGCcUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 97611 0.71 0.409308
Target:  5'- gGCaCGUGCacCUGCGA-GCGG-CGCGCGg -3'
miRNA:   3'- -CG-GCACGa-GGCGCUaCGCCuGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 44573 0.71 0.426311
Target:  5'- uGCCGaggaGCUCCGCugcaGcgGCGGACGCa-- -3'
miRNA:   3'- -CGGCa---CGAGGCG----CuaCGCCUGCGcgu -5'
29429 5' -60.5 NC_006151.1 + 21287 0.71 0.426311
Target:  5'- cGCgGUGCccgugCCGaCGAUcaccgaGCGGugGCGCGa -3'
miRNA:   3'- -CGgCACGa----GGC-GCUA------CGCCugCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 122370 0.71 0.442846
Target:  5'- uGCaCGgGCUCgacgaggCGCGccGCGGGCGCGCGc -3'
miRNA:   3'- -CG-GCaCGAG-------GCGCuaCGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 664 0.71 0.443726
Target:  5'- gGCCGgggcggGCUCCGCGGaucGCaucGGCGCGCc -3'
miRNA:   3'- -CGGCa-----CGAGGCGCUa--CGc--CUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 137100 0.71 0.443726
Target:  5'- cGCgGUGCUggCCGgGGacgccUGgGGGCGCGCGa -3'
miRNA:   3'- -CGgCACGA--GGCgCU-----ACgCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 49671 0.71 0.443726
Target:  5'- gGCCGcGC-CCG-GAggacGCGGACGCGCc -3'
miRNA:   3'- -CGGCaCGaGGCgCUa---CGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 20311 0.7 0.452582
Target:  5'- cGCCGUgGCguuggcggCgGCGA-GCaGGACGCGCGa -3'
miRNA:   3'- -CGGCA-CGa-------GgCGCUaCG-CCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 98633 0.7 0.452582
Target:  5'- cGCCGc-CUUCGaCGAggcccugGCGGGCGCGCGc -3'
miRNA:   3'- -CGGCacGAGGC-GCUa------CGCCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 53519 0.7 0.452582
Target:  5'- cGCCGcGCgccCCGUGAgccGCuccaGGGCGCGCAg -3'
miRNA:   3'- -CGGCaCGa--GGCGCUa--CG----CCUGCGCGU- -5'
29429 5' -60.5 NC_006151.1 + 90678 0.7 0.452582
Target:  5'- gGCCGcuUGUcccCCGCGGcgggggcgGCGGACGCGCc -3'
miRNA:   3'- -CGGC--ACGa--GGCGCUa-------CGCCUGCGCGu -5'
29429 5' -60.5 NC_006151.1 + 55458 0.7 0.452582
Target:  5'- cGCCG-GCcCCGCcg-GgGGGCGCGCGc -3'
miRNA:   3'- -CGGCaCGaGGCGcuaCgCCUGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.